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Comment:
Comment: How to approach time course RNAseq data? Seeing 80% DE genes in timepoint groups
3 days ago
Gordon Smyth
50k
2
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0
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304
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Comment:
Comment: Log-cpm values from limma
8 days ago • updated 7 days ago
Gordon Smyth
50k
1
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1
reply
314
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Comment:
Comment: Method to find pathways different between 2 groups
10 days ago
Gordon Smyth
50k
0
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0
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261
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Comment:
Comment: package goseq seems to be not available on the latest version of R
12 days ago • updated 11 days ago
Gordon Smyth
50k
1
vote
1
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1.3k
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Comment:
Comment: Why p value inconsistent when using different number of pathway score?
18 days ago
Gordon Smyth
50k
1
vote
1
reply
467
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Comment:
Comment: FilterByExpr low counts with small sample size
26 days ago
Gordon Smyth
50k
1
vote
1
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1.3k
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Comment:
Comment: Why p value inconsistent when using different number of pathway score?
27 days ago
Gordon Smyth
50k
1
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0
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1.3k
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Comment:
Comment: Why p value inconsistent when using different number of pathway score?
27 days ago
Gordon Smyth
50k
0
votes
0
replies
210
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Comment:
Comment: Finding DEGs by using edgeR
28 days ago
Gordon Smyth
50k
0
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1
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467
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Comment:
Comment: FilterByExpr low counts with small sample size
29 days ago
Gordon Smyth
50k
0
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0
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1.3k
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Comment:
Comment: Batch correction and repeated measures
29 days ago
Gordon Smyth
50k
0
votes
1
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361
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Comment:
Comment: Methylation Analysis experiment design using Limma
4 weeks ago
Gordon Smyth
50k
1
vote
1
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974
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Comment:
Comment: Light difference when using coef vs omit a group when compare 3 groups.
4 weeks ago
Gordon Smyth
50k
1
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1
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974
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Comment:
Comment: Light difference when using coef vs omit a group when compare 3 groups.
4 weeks ago
Gordon Smyth
50k
1
vote
2
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974
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Comment:
Comment: Light difference when using coef vs omit a group when compare 3 groups.
4 weeks ago
Gordon Smyth
50k
1
vote
1
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2.0k
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Comment:
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
5 weeks ago
Gordon Smyth
50k
1
vote
0
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2.0k
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Comment:
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
5 weeks ago
Gordon Smyth
50k
0
votes
0
replies
265
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Comment:
Comment: Regressing out batch effects
6 weeks ago
Gordon Smyth
50k
1
vote
1
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2.0k
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Comment:
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
6 weeks ago
Gordon Smyth
50k
0
votes
0
replies
985
views
Comment:
Comment: limma models out of memory issue on Slurm HPC
6 weeks ago
Gordon Smyth
50k
0
votes
1
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462
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Comment:
Comment: Using a change in a continuous explanatory variable to test changes in gene expr
6 weeks ago
Gordon Smyth
50k
0
votes
1
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985
views
Comment:
Comment: limma models out of memory issue on Slurm HPC
6 weeks ago
Gordon Smyth
50k
1
vote
0
replies
985
views
Comment:
Comment: limma models out of memory issue on Slurm HPC
6 weeks ago
Gordon Smyth
50k
2
votes
1
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985
views
Comment:
Comment: limma models out of memory issue on Slurm HPC
6 weeks ago
Gordon Smyth
50k
0
votes
1
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985
views
Comment:
Comment: limma models out of memory issue on Slurm HPC
6 weeks ago
Gordon Smyth
50k
0
votes
1
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985
views
Comment:
Comment: limma models out of memory issue on Slurm HPC
6 weeks ago
Gordon Smyth
50k
0
votes
1
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985
views
Comment:
Comment: limma models out of memory issue on Slurm HPC
6 weeks ago
Gordon Smyth
50k
0
votes
1
reply
985
views
Comment:
Comment: limma models out of memory issue on Slurm HPC
6 weeks ago
Gordon Smyth
50k
0
votes
1
reply
985
views
Comment:
Comment: limma models out of memory issue on Slurm HPC
6 weeks ago
Gordon Smyth
50k
1
vote
1
reply
2.0k
views
Comment:
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
6 weeks ago
Gordon Smyth
50k
0
votes
1
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447
views
Comment:
Comment: Adjust RNA-seq counts (more than one batch variable) for plotting differentially
6 weeks ago
Gordon Smyth
50k
1
vote
0
replies
2.0k
views
Comment:
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
6 weeks ago
Gordon Smyth
50k
1
vote
2
replies
2.0k
views
Comment:
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
6 weeks ago
Gordon Smyth
50k
1
vote
1
reply
2.0k
views
Comment:
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
6 weeks ago
Gordon Smyth
50k
0
votes
0
replies
412
views
Comment:
Comment: Differing results from plotMDS and PCAtools
6 weeks ago
Gordon Smyth
50k
3
votes
2
replies
2.0k
views
Comment:
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
7 weeks ago • updated 6 weeks ago
Gordon Smyth
50k
1
vote
0
replies
412
views
Comment:
Comment: Differing results from plotMDS and PCAtools
7 weeks ago • updated 6 weeks ago
Gordon Smyth
50k
0
votes
0
replies
370
views
Comment:
Comment: Doing comparison of RNA-seq data using EdgeR
7 weeks ago
Gordon Smyth
50k
2
votes
0
replies
734
views
Comment:
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
7 weeks ago
Gordon Smyth
50k
1
vote
0
replies
484
views
Comment:
Comment: DEG Filtering
7 weeks ago
Gordon Smyth
50k
0
votes
1
reply
985
views
Comment:
Comment: limma models out of memory issue on Slurm HPC
7 weeks ago
Gordon Smyth
50k
2
votes
1
reply
479
views
Comment:
Comment: Batch Effect Correction, Gene Filtering
8 weeks ago
Gordon Smyth
50k
1
vote
0
replies
479
views
Comment:
Comment: Batch Effect Correction, Gene Filtering
8 weeks ago • updated 7 weeks ago
Gordon Smyth
50k
1
vote
1
reply
484
views
Comment:
Comment: DEG Filtering
8 weeks ago
Gordon Smyth
50k
1
vote
1
reply
484
views
Comment:
Comment: DEG Filtering
8 weeks ago
Gordon Smyth
50k
1
vote
0
replies
309
views
Comment:
Comment: edgeR, 3 x 2 design with a batch effect and contrasts
8 weeks ago
Gordon Smyth
50k
1
vote
1
reply
555
views
Comment:
Comment: limma: vooma mean-variance trend and data filtration
8 weeks ago
Gordon Smyth
50k
0
votes
0
replies
195
views
Comment:
Comment: Rsubread: buildindex() should support multiple reference files
8 weeks ago
Gordon Smyth
50k
0
votes
1
reply
555
views
Comment:
Comment: limma: vooma mean-variance trend and data filtration
9 weeks ago
Gordon Smyth
50k
0
votes
1
reply
540
views
Comment:
Comment: Constrast for Time Course Experiments using Limma
10 weeks ago
Gordon Smyth
50k
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