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Comment: Comment: Strange logFC values in differential methylation site anslysis
8 weeks ago Gordon Smyth 50k
0
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1
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721
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Comment: Comment: Strange logFC values in differential methylation site anslysis
8 weeks ago Gordon Smyth 50k
0
votes
0
replies
721
views
Comment: Comment: Strange logFC values in differential methylation site anslysis
8 weeks ago Gordon Smyth 50k
0
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1
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294
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Comment: Comment: Interactions in batches of varying size with different number of replicates usin
9 weeks ago Gordon Smyth 50k
0
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1
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294
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Comment: Comment: Interactions in batches of varying size with different levels of replicates usin
9 weeks ago Gordon Smyth 50k
0
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2
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721
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Comment: Comment: Strange logFC values in differential methylation site anslysis
9 weeks ago Gordon Smyth 50k
1
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1
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478
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Comment: Comment: Library size normalization in methylation count analysis
9 weeks ago Gordon Smyth 50k
0
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1
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478
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Comment: Comment: Library size normalization in methylation count analysis
9 weeks ago Gordon Smyth 50k
0
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2
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551
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Comment: Comment: limma fo continous variables
9 weeks ago Gordon Smyth 50k
0
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1
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551
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Comment: Comment: limma fo continous variables
10 weeks ago Gordon Smyth 50k
0
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1
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403
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Comment: Comment: edgeR: DEGs in a CRD factorial (2x2x2)
10 weeks ago Gordon Smyth 50k
3
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388
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Comment: Comment: Confusion about LFC using contrasts weights in EdgeR
10 weeks ago Gordon Smyth 50k
1
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1
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403
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Comment: Comment: edgeR: DEGs in a CRD factorial (2x2x2)
10 weeks ago Gordon Smyth 50k
0
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1
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622
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Comment: Comment: Divergent results using exact, glmLRT, and glmQLF tests in edgeR
11 weeks ago Gordon Smyth 50k
0
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1
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622
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Comment: Comment: Divergent results using exact, glmLRT, and glmQLF tests in edgeR
11 weeks ago Gordon Smyth 50k
0
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1
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622
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Comment: Comment: Divergent results using exact, glmLRT, and glmQLF tests in edgeR
11 weeks ago Gordon Smyth 50k
0
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0
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344
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Comment: Comment: CAMERA + Gene Ontology Gene Sets
11 weeks ago Gordon Smyth 50k
0
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1
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364
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Comment: Comment: limma with interaction term
11 weeks ago Gordon Smyth 50k
0
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0
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582
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Comment: Comment: filtering lowly expressed reads
12 weeks ago Gordon Smyth 50k
0
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1
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346
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Comment: Comment: Nested paired design
12 weeks ago Gordon Smyth 50k
0
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0
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323
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Comment: Comment: Longitudinal analysis in Limma
12 weeks ago Gordon Smyth 50k
1
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1
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402
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Comment: Comment: limma design model for categorical variable
12 weeks ago • updated 11 weeks ago Gordon Smyth 50k
2
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348
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Comment: Comment: voom with quality weights after RUV correction
12 weeks ago Gordon Smyth 50k
1
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0
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6.1k
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Comment: Comment: Rsubread::featureCounts extremely slow on some annotations
12 weeks ago Gordon Smyth 50k
1
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1
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425
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Comment: Comment: goseq, warning and strange plot from nullp
3 months ago Gordon Smyth 50k
0
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1
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437
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Comment: Comment: Adjusting featureCounts settings in Galaxy for miRNA overlaps
3 months ago Gordon Smyth 50k
0
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0
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437
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Comment: Comment: Adjusting featureCounts settings in Galaxy for miRNA overlaps
3 months ago Gordon Smyth 50k
1
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0
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563
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Comment: Comment: readDGE in edgeR giving me path names as sample names
3 months ago Gordon Smyth 50k
1
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1
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747
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Comment: Comment: [BUG] Rsubread::featureCounts quirk in CORE files: different target list orderin
3 months ago Gordon Smyth 50k
1
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1
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563
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Comment: Comment: readDGE in edgeR giving me path names as sample names
3 months ago Gordon Smyth 50k
1
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1
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3.8k
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Comment: Comment: Differential protein/biomarker expression using limma: is that possible?
3 months ago Gordon Smyth 50k
2
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1
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542
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Comment: Comment: Monotonic genes in results of differential gene expression analysis
3 months ago Gordon Smyth 50k
0
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0
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542
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Comment: Comment: Monotonic genes in results of differential gene expression analysis
3 months ago Gordon Smyth 50k
1
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1
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579
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Comment: Comment: Does EdgeR trimmed mean of M values (TMM) account for gene length?
3 months ago Gordon Smyth 50k
0
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0
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336
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Comment: Comment: EdgeR for methylation analysis when there is no replicates
3 months ago Gordon Smyth 50k
1
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0
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663
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Comment: Comment: EdgeR: Should I include all samples/conditions in my dispersion estimation while
3 months ago Gordon Smyth 50k
1
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1
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882
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Comment: Comment: limma-trend vs. limma-voom theoretical difference
3 months ago Gordon Smyth 50k
2
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1
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582
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Comment: Comment: filtering lowly expressed reads
3 months ago Gordon Smyth 50k
1
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1
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1.1k
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Comment: Comment: RNAseq paired-sample differantial expression analysis with many samples
3 months ago Gordon Smyth 50k
0
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0
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1.1k
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Comment: Comment: RNAseq paired-sample differantial expression analysis with many samples
3 months ago Gordon Smyth 50k
0
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0
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328
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Comment: Comment: Group comparison with one sample
3 months ago Gordon Smyth 50k
0
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0
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1.1k
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Comment: Comment: different number of DEG because of outliers
3 months ago Gordon Smyth 50k
3
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1
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1.1k
views
Comment: Comment: RNAseq paired-sample differantial expression analysis with many samples
3 months ago Gordon Smyth 50k
0
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0
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510
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Comment: Comment: Different genes expression with limma
3 months ago Gordon Smyth 50k
0
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1
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611
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Comment: Comment: Help with model for differential expression analysis
4 months ago Gordon Smyth 50k
2
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1
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1.5k
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Comment: Comment: Can the limma package be applied to Log2 RUV-normalized data?
4 months ago Gordon Smyth 50k
0
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1
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626
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Comment: Comment: Correct the batch effect in methylation analysis in R
4 months ago Gordon Smyth 50k
0
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0
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829
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Comment: Comment: DuplicateCorrelation() block by duplicate sample or by cell line ?
4 months ago Gordon Smyth 50k
0
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0
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341
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Comment: Comment: NCBI protein conversion to CDNA and NCBI gene (in R)
5 months ago Gordon Smyth 50k
1
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1
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1.1k
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Comment: Comment: Why is DMRcate not available for Bioconductor version 3.18?
5 months ago Gordon Smyth 50k
1,720 results • Page 2 of 35
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