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Answer: Answer: NEED FOR NESSASORY HELP
3 hours ago Gordon Smyth 50k
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39
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Answer: Answer: Gene-by-sample covariates in limma
3 hours ago Gordon Smyth 50k
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113
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Answer: Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
4 hours ago • updated 1 hour ago Gordon Smyth 50k
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1.1k
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Comment: Comment: Why p value inconsistent when using different number of pathway score?
3 days ago Gordon Smyth 50k
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151
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Answer: Answer: Improving the design matrices vignette in RNAseq123
6 days ago Gordon Smyth 50k
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161
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Answer: Answer: Citation for edgeR user guide
9 days ago Gordon Smyth 50k
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1
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150
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Answer: Answer: limma-voom: Calculate the log-fold change in gene expression within a sample
10 days ago Gordon Smyth 50k
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1
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405
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Comment: Comment: FilterByExpr low counts with small sample size
11 days ago Gordon Smyth 50k
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1
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1.1k
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Comment: Comment: Why p value inconsistent when using different number of pathway score?
12 days ago Gordon Smyth 50k
2
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1
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1.1k
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Answer: Answer: Why p value inconsistent when using different number of pathway score?
12 days ago • updated 11 days ago Gordon Smyth 50k
1
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0
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1.1k
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Comment: Comment: Why p value inconsistent when using different number of pathway score?
12 days ago Gordon Smyth 50k
0
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1
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198
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Answer: Answer: RNAseq:Technical replicates from different batches
13 days ago Gordon Smyth 50k
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178
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Comment: Comment: Finding DEGs by using edgeR
13 days ago Gordon Smyth 50k
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405
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Answer: Answer: FilterByExpr low counts with small sample size
13 days ago Gordon Smyth 50k
0
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1
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125
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Answer: Answer: How to make DGEList and design matrix by edgeR package
13 days ago Gordon Smyth 50k
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1
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178
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Answer: Answer: Finding DEGs by using edgeR
13 days ago Gordon Smyth 50k
3
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163
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Answer: Answer: Log-cpm values from limma
13 days ago Gordon Smyth 50k
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1
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405
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Comment: Comment: FilterByExpr low counts with small sample size
15 days ago • updated 14 days ago Gordon Smyth 50k
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0
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1.2k
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Comment: Comment: Batch correction and repeated measures
15 days ago Gordon Smyth 50k
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1
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292
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Comment: Comment: Methylation Analysis experiment design using Limma
15 days ago Gordon Smyth 50k
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1
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292
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Answer: Answer: Methylation Analysis experiment design using Limma
15 days ago Gordon Smyth 50k
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1
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899
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Comment: Comment: Light difference when using coef vs omit a group when compare 3 groups.
15 days ago Gordon Smyth 50k
1
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1
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899
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Comment: Comment: Light difference when using coef vs omit a group when compare 3 groups.
16 days ago Gordon Smyth 50k
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0
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182
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Answer: Answer: Differentially expressed genes in monocle pseudotime
16 days ago Gordon Smyth 50k
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0
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322
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Answer: Answer: permutation test in edgeR
18 days ago • updated 11 days ago Gordon Smyth 50k
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343
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Answer: Answer: Why is my gene not significantly differentially expressed?
18 days ago • updated 17 days ago Gordon Smyth 50k
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2
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899
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Comment: Comment: Light difference when using coef vs omit a group when compare 3 groups.
19 days ago • updated 17 days ago Gordon Smyth 50k
2
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1
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899
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Answer: Answer: Light difference when using coef vs omit a group when compare 3 groups.
20 days ago Gordon Smyth 50k
0
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0
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157
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Answer: Answer: Limma design matrix only showing 3/4 treatments?
26 days ago Gordon Smyth 50k
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1
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1.9k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
27 days ago • updated 26 days ago Gordon Smyth 50k
1
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0
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1.9k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
27 days ago • updated 26 days ago Gordon Smyth 50k
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0
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233
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Comment: Comment: Regressing out batch effects
27 days ago Gordon Smyth 50k
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1
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1.9k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
27 days ago Gordon Smyth 50k
0
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0
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881
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Comment: Comment: limma models out of memory issue on Slurm HPC
28 days ago Gordon Smyth 50k
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1
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428
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Comment: Comment: Using a change in a continuous explanatory variable to test changes in gene expr
28 days ago Gordon Smyth 50k
0
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1
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881
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Comment: Comment: limma models out of memory issue on Slurm HPC
29 days ago • updated 28 days ago Gordon Smyth 50k
1
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1
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428
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Answer: Answer: Using a change in a continuous explanatory variable to test changes in gene expr
29 days ago • updated 28 days ago Gordon Smyth 50k
0
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1
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159
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Answer: Answer: edgeR analysis: glm functions and offset matrix
29 days ago Gordon Smyth 50k
1
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0
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881
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Comment: Comment: limma models out of memory issue on Slurm HPC
29 days ago Gordon Smyth 50k
2
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1
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881
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Comment: Comment: limma models out of memory issue on Slurm HPC
29 days ago Gordon Smyth 50k
0
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1
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881
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Comment: Comment: limma models out of memory issue on Slurm HPC
29 days ago Gordon Smyth 50k
0
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1
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881
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Comment: Comment: limma models out of memory issue on Slurm HPC
29 days ago Gordon Smyth 50k
0
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1
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881
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Comment: Comment: limma models out of memory issue on Slurm HPC
29 days ago Gordon Smyth 50k
0
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1
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881
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Comment: Comment: limma models out of memory issue on Slurm HPC
29 days ago Gordon Smyth 50k
0
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1
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881
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Comment: Comment: limma models out of memory issue on Slurm HPC
29 days ago Gordon Smyth 50k
1
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1
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1.9k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
4 weeks ago Gordon Smyth 50k
0
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1
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414
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Comment: Comment: Adjust RNA-seq counts (more than one batch variable) for plotting differentially
4 weeks ago Gordon Smyth 50k
0
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1
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414
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Answer: Answer: Adjust RNA-seq counts (more than one batch variable) for plotting differentially
4 weeks ago Gordon Smyth 50k
1
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0
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1.9k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
4 weeks ago Gordon Smyth 50k
1
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2
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1.9k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
4 weeks ago Gordon Smyth 50k
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