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Comment: Comment: How to approach time course RNAseq data? Seeing 80% DE genes in timepoint groups
4 days ago Gordon Smyth 50k
2
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309
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Comment: Comment: Log-cpm values from limma
9 days ago Gordon Smyth 50k
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1
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326
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Comment: Comment: Method to find pathways different between 2 groups
11 days ago Gordon Smyth 50k
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271
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Comment: Comment: package goseq seems to be not available on the latest version of R
13 days ago • updated 12 days ago Gordon Smyth 50k
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1.3k
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Comment: Comment: Why p value inconsistent when using different number of pathway score?
19 days ago Gordon Smyth 50k
1
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1
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471
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Comment: Comment: FilterByExpr low counts with small sample size
28 days ago Gordon Smyth 50k
1
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1
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1.3k
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Comment: Comment: Why p value inconsistent when using different number of pathway score?
28 days ago Gordon Smyth 50k
1
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0
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1.3k
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Comment: Comment: Why p value inconsistent when using different number of pathway score?
28 days ago Gordon Smyth 50k
0
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0
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214
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Comment: Comment: Finding DEGs by using edgeR
29 days ago Gordon Smyth 50k
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1
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471
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Comment: Comment: FilterByExpr low counts with small sample size
4 weeks ago Gordon Smyth 50k
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1.3k
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Comment: Comment: Batch correction and repeated measures
4 weeks ago Gordon Smyth 50k
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1
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364
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Comment: Comment: Methylation Analysis experiment design using Limma
4 weeks ago Gordon Smyth 50k
1
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1
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975
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Comment: Comment: Light difference when using coef vs omit a group when compare 3 groups.
4 weeks ago Gordon Smyth 50k
1
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1
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975
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Comment: Comment: Light difference when using coef vs omit a group when compare 3 groups.
4 weeks ago Gordon Smyth 50k
1
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2
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975
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Comment: Comment: Light difference when using coef vs omit a group when compare 3 groups.
5 weeks ago • updated 4 weeks ago Gordon Smyth 50k
1
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1
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2.0k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
6 weeks ago Gordon Smyth 50k
1
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2.0k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
6 weeks ago Gordon Smyth 50k
0
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0
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267
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Comment: Comment: Regressing out batch effects
6 weeks ago Gordon Smyth 50k
1
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1
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2.0k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
6 weeks ago Gordon Smyth 50k
0
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0
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992
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Comment: Comment: limma models out of memory issue on Slurm HPC
6 weeks ago Gordon Smyth 50k
0
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1
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463
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Comment: Comment: Using a change in a continuous explanatory variable to test changes in gene expr
6 weeks ago Gordon Smyth 50k
0
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1
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992
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Comment: Comment: limma models out of memory issue on Slurm HPC
6 weeks ago Gordon Smyth 50k
1
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0
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992
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Comment: Comment: limma models out of memory issue on Slurm HPC
6 weeks ago Gordon Smyth 50k
2
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1
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992
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Comment: Comment: limma models out of memory issue on Slurm HPC
6 weeks ago Gordon Smyth 50k
0
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1
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992
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Comment: Comment: limma models out of memory issue on Slurm HPC
6 weeks ago Gordon Smyth 50k
0
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1
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992
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Comment: Comment: limma models out of memory issue on Slurm HPC
6 weeks ago Gordon Smyth 50k
0
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1
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992
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Comment: Comment: limma models out of memory issue on Slurm HPC
6 weeks ago Gordon Smyth 50k
0
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1
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992
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Comment: Comment: limma models out of memory issue on Slurm HPC
6 weeks ago Gordon Smyth 50k
0
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1
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992
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Comment: Comment: limma models out of memory issue on Slurm HPC
6 weeks ago Gordon Smyth 50k
1
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1
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2.0k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
6 weeks ago Gordon Smyth 50k
0
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1
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448
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Comment: Comment: Adjust RNA-seq counts (more than one batch variable) for plotting differentially
6 weeks ago Gordon Smyth 50k
1
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0
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2.0k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
7 weeks ago Gordon Smyth 50k
1
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2
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2.0k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
7 weeks ago Gordon Smyth 50k
1
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1
reply
2.0k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
7 weeks ago Gordon Smyth 50k
0
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0
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414
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Comment: Comment: Differing results from plotMDS and PCAtools
7 weeks ago Gordon Smyth 50k
3
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2
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2.0k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
7 weeks ago • updated 6 weeks ago Gordon Smyth 50k
1
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0
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414
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Comment: Comment: Differing results from plotMDS and PCAtools
7 weeks ago Gordon Smyth 50k
0
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0
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373
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Comment: Comment: Doing comparison of RNA-seq data using EdgeR
7 weeks ago Gordon Smyth 50k
2
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0
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738
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Comment: Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
7 weeks ago Gordon Smyth 50k
1
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0
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488
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Comment: Comment: DEG Filtering
7 weeks ago Gordon Smyth 50k
0
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1
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992
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Comment: Comment: limma models out of memory issue on Slurm HPC
7 weeks ago Gordon Smyth 50k
2
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1
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481
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Comment: Comment: Batch Effect Correction, Gene Filtering
8 weeks ago Gordon Smyth 50k
1
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0
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481
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Comment: Comment: Batch Effect Correction, Gene Filtering
8 weeks ago Gordon Smyth 50k
1
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1
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488
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Comment: Comment: DEG Filtering
8 weeks ago Gordon Smyth 50k
1
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1
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488
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Comment: Comment: DEG Filtering
8 weeks ago Gordon Smyth 50k
1
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0
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310
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Comment: Comment: edgeR, 3 x 2 design with a batch effect and contrasts
8 weeks ago Gordon Smyth 50k
1
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1
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562
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Comment: Comment: limma: vooma mean-variance trend and data filtration
8 weeks ago Gordon Smyth 50k
0
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0
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199
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Comment: Comment: Rsubread: buildindex() should support multiple reference files
9 weeks ago Gordon Smyth 50k
0
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1
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562
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Comment: Comment: limma: vooma mean-variance trend and data filtration
9 weeks ago Gordon Smyth 50k
0
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1
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542
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Comment: Comment: Constrast for Time Course Experiments using Limma
10 weeks ago Gordon Smyth 50k
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