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Comment: Comment: goseq, warning and strange plot from nullp
3 months ago Gordon Smyth 50k
0
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466
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Answer: Answer: goseq, warning and strange plot from nullp
3 months ago Gordon Smyth 50k
1
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1
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1.1k
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Answer: Answer: Packages don't update, but no error or warning is thrown
3 months ago Gordon Smyth 50k
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382
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Answer: Answer: Longitudinal analysis in Limma
3 months ago Gordon Smyth 50k
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473
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Comment: Comment: Adjusting featureCounts settings in Galaxy for miRNA overlaps
3 months ago Gordon Smyth 50k
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473
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Comment: Comment: Adjusting featureCounts settings in Galaxy for miRNA overlaps
3 months ago Gordon Smyth 50k
0
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0
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473
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Answer: Answer: Adjusting featureCounts settings in Galaxy for miRNA overlaps
3 months ago Gordon Smyth 50k
2
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1
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334
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Answer: Answer: Using limma for controlling age variable
3 months ago Gordon Smyth 50k
3
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1
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301
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Answer: Answer: Question about DMRcate
3 months ago Gordon Smyth 50k
1
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0
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606
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Comment: Comment: readDGE in edgeR giving me path names as sample names
3 months ago Gordon Smyth 50k
1
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1
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781
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Comment: Comment: [BUG] Rsubread::featureCounts quirk in CORE files: different target list orderin
3 months ago Gordon Smyth 50k
1
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1
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606
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Comment: Comment: readDGE in edgeR giving me path names as sample names
3 months ago Gordon Smyth 50k
1
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1
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781
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Answer: Answer: [BUG] Rsubread::featureCounts quirk in CORE files: different target list orderin
3 months ago Gordon Smyth 50k
0
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2
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579
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Answer: Answer: edgeR error "Design matrix not of full rank"
3 months ago Gordon Smyth 50k
1
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3.8k
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Comment: Comment: Differential protein/biomarker expression using limma: is that possible?
3 months ago Gordon Smyth 50k
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0
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289
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Answer: Answer: Problems with Feature counting
3 months ago Gordon Smyth 50k
2
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1
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599
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Comment: Comment: Monotonic genes in results of differential gene expression analysis
3 months ago Gordon Smyth 50k
0
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0
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599
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Comment: Comment: Monotonic genes in results of differential gene expression analysis
3 months ago Gordon Smyth 50k
1
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1
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649
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Comment: Comment: Does EdgeR trimmed mean of M values (TMM) account for gene length?
3 months ago Gordon Smyth 50k
1
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1
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649
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Answer: Answer: Does EdgeR trimmed mean of M values (TMM) account for gene length?
3 months ago Gordon Smyth 50k
3
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1
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599
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Answer: Answer: Monotonic genes in results of differential gene expression analysis
3 months ago Gordon Smyth 50k
0
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0
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380
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Comment: Comment: EdgeR for methylation analysis when there is no replicates
4 months ago Gordon Smyth 50k
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1
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380
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Answer: Answer: EdgeR for methylation analysis when there is no replicates
4 months ago Gordon Smyth 50k
1
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0
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717
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Comment: Comment: EdgeR: Should I include all samples/conditions in my dispersion estimation while
4 months ago Gordon Smyth 50k
1
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1
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926
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Comment: Comment: limma-trend vs. limma-voom theoretical difference
4 months ago Gordon Smyth 50k
2
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1
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717
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Answer: Answer: EdgeR: Should I include all samples/conditions in my dispersion estimation while
4 months ago Gordon Smyth 50k
2
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1
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641
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Comment: Comment: filtering lowly expressed reads
4 months ago Gordon Smyth 50k
1
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1
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1.1k
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Comment: Comment: RNAseq paired-sample differantial expression analysis with many samples
4 months ago Gordon Smyth 50k
2
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1
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641
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Answer: Answer: filtering lowly expressed reads
4 months ago Gordon Smyth 50k
3
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327
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Answer: Answer: Dataset imbalance
4 months ago Gordon Smyth 50k
0
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0
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1.1k
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Comment: Comment: RNAseq paired-sample differantial expression analysis with many samples
4 months ago Gordon Smyth 50k
0
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0
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346
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Comment: Comment: Group comparison with one sample
4 months ago Gordon Smyth 50k
0
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0
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1.1k
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Comment: Comment: different number of DEG because of outliers
4 months ago Gordon Smyth 50k
3
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1
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1.1k
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Comment: Comment: RNAseq paired-sample differantial expression analysis with many samples
4 months ago Gordon Smyth 50k
0
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1
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1.1k
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Answer: Answer: RNAseq paired-sample differantial expression analysis with many samples
4 months ago Gordon Smyth 50k
0
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0
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548
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Comment: Comment: Different genes expression with limma
4 months ago Gordon Smyth 50k
0
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0
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326
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Answer: Answer: download problem
4 months ago Gordon Smyth 50k
0
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1
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346
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Answer: Answer: Group comparison with one sample
4 months ago Gordon Smyth 50k
0
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1
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643
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Comment: Comment: Help with model for differential expression analysis
4 months ago Gordon Smyth 50k
0
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1
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643
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Answer: Answer: Help with model for differential expression analysis
4 months ago Gordon Smyth 50k
1
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1
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494
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Answer: Answer: How to perform longitudinal analysis using EdgeR
4 months ago Gordon Smyth 50k
2
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0
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313
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Answer: Answer: removeBatchEffect with non-linear model fit
5 months ago Gordon Smyth 50k
2
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1
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1.5k
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Comment: Comment: Can the limma package be applied to Log2 RUV-normalized data?
5 months ago Gordon Smyth 50k
0
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1
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680
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Comment: Comment: Correct the batch effect in methylation analysis in R
5 months ago Gordon Smyth 50k
2
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1
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680
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Answer: Answer: Correct the batch effect in methylation analysis in R
5 months ago Gordon Smyth 50k
0
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1
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429
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Answer: Answer: Agilent Microarray Gene Oncology analysis gone wrong
5 months ago Gordon Smyth 50k
0
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0
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473
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Answer: Answer: Assess fit of variance prior
5 months ago Gordon Smyth 50k
3
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0
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600
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Answer: Answer: Filter genes by expression for voomLmFit
5 months ago Gordon Smyth 50k
0
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0
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877
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Comment: Comment: DuplicateCorrelation() block by duplicate sample or by cell line ?
5 months ago Gordon Smyth 50k
1
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1
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468
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Answer: Answer: RNASeq time course analysis, missing time points for control
5 months ago Gordon Smyth 50k
5,095 results • Page 4 of 102
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