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0
votes
2
replies
4.4k
views
Comment:
Comment: Deseq2 installed, but there is no package called ‘Biostrings’
24 months ago
James W. MacDonald
67k
1
vote
3
replies
4.4k
views
Answer:
Answer: Deseq2 installed, but there is no package called ‘Biostrings’
24 months ago
James W. MacDonald
67k
0
votes
1
reply
1.0k
views
Answer:
Answer: Not retrieving msigdb genesets
24 months ago
James W. MacDonald
67k
1
vote
1
reply
2.6k
views
Comment:
Comment: Installing 'affy' package on MacOS M2 chip
24 months ago
James W. MacDonald
67k
0
votes
1
reply
972
views
Comment:
Comment: Is there a way to identify constituently expressed genes (not differentially exp
24 months ago
James W. MacDonald
67k
0
votes
1
reply
2.5k
views
Answer:
Answer: Error when annotating ENSEMBLE transcript IDs from chicken annotation DB
24 months ago
James W. MacDonald
67k
1
vote
0
replies
952
views
Answer:
Answer: Weird distribution of p-values, with no significant adjusted p-values?
24 months ago
James W. MacDonald
67k
0
votes
1
reply
2.6k
views
Answer:
Answer: Installing 'affy' package on MacOS M2 chip
24 months ago
James W. MacDonald
67k
0
votes
0
replies
932
views
Answer:
Answer: Error with AnnotationTrack(gene, name = "Gene Model") part 3 in edX advanced bio
24 months ago
James W. MacDonald
67k
0
votes
1
reply
972
views
Answer:
Answer: Is there a way to identify constituently expressed genes (not differentially exp
24 months ago
James W. MacDonald
67k
0
votes
1
reply
1.1k
views
Answer:
Answer: ggplot2 bar plot
24 months ago
James W. MacDonald
67k
0
votes
0
replies
3.4k
views
Answer:
Answer: GEOquery not responding, Error in open.connection(x, "rb") : schannel: next I
2.0 years ago
James W. MacDonald
67k
0
votes
1
reply
1.8k
views
Answer:
Answer: Peak annotation
2.0 years ago
James W. MacDonald
67k
0
votes
0
replies
890
views
Comment:
Comment: ' Update all/some/none? [a/s/n]: '
2.0 years ago
James W. MacDonald
67k
0
votes
1
reply
2.2k
views
Comment:
Comment: Fold Change calculation when Batch Effect is present in RNA-seq data (DEseq2)
2.0 years ago
James W. MacDonald
67k
1
vote
0
replies
1.5k
views
Answer:
Answer: I have problems installing DESeq2 using R4.1.2. It tells me that it is not avail
2.0 years ago
James W. MacDonald
67k
2
votes
1
reply
2.2k
views
Comment:
Comment: Fold Change calculation when Batch Effect is present in RNA-seq data (DEseq2)
2.0 years ago
James W. MacDonald
67k
1
vote
1
reply
2.2k
views
Answer:
Answer: Fold Change calculation when Batch Effect is present in RNA-seq data (DEseq2)
2.0 years ago
James W. MacDonald
67k
0
votes
1
reply
1.5k
views
Comment:
Comment: Help with differential gene expression using Agilent Microarray data (from GEO d
2.0 years ago
James W. MacDonald
67k
0
votes
1
reply
1.5k
views
Answer:
Answer: Help with differential gene expression using Agilent Microarray data (from GEO d
2.0 years ago
James W. MacDonald
67k
2
votes
0
replies
1.1k
views
Answer:
Answer: Correcting for all the comparisons that have been made in analysis
2.0 years ago
James W. MacDonald
67k
0
votes
0
replies
2.5k
views
Answer:
Answer: Unable to load data "pasillaGenes" in R because DESeq is not installed?
2.0 years ago
James W. MacDonald
67k
0
votes
0
replies
4.6k
views
Comment:
Comment: All genes in a set for gseGO funtion
2.0 years ago
James W. MacDonald
67k
1
vote
1
reply
4.6k
views
Comment:
Comment: All genes in a set for gseGO funtion
2.0 years ago
James W. MacDonald
67k
0
votes
1
reply
4.6k
views
Comment:
Comment: All genes in a set for gseGO funtion
2.0 years ago
James W. MacDonald
67k
0
votes
2
replies
4.6k
views
Comment:
Comment: All genes in a set for gseGO funtion
2.0 years ago
James W. MacDonald
67k
0
votes
0
replies
1.4k
views
Answer:
Answer: Does DeSeq2 make comparisons between all samples vs. all controls, or between ma
2.0 years ago
James W. MacDonald
67k
0
votes
1
reply
4.6k
views
Comment:
Comment: All genes in a set for gseGO funtion
2.0 years ago
James W. MacDonald
67k
0
votes
1
reply
4.6k
views
Answer:
Answer: All genes in a set for gseGO funtion
2.0 years ago
James W. MacDonald
67k
2
votes
1
reply
2.3k
views
Answer:
Answer: getSeq failing with DNAStringSet and GRanges
2.0 years ago
James W. MacDonald
67k
0
votes
0
replies
1.4k
views
Answer:
Answer: bitr returning unexpected length of gene IDs after conversion.
2.0 years ago
James W. MacDonald
67k
0
votes
1
reply
1.3k
views
Comment:
Comment: GO data for fgsea: should ensembl data be augmented to contain parent terms?
2.0 years ago
James W. MacDonald
67k
0
votes
1
reply
1.3k
views
Answer:
Answer: GO data for fgsea: should ensembl data be augmented to contain parent terms?
2.0 years ago
James W. MacDonald
67k
4
votes
0
replies
1.7k
views
Comment:
Comment: karyoploteR genome coverage plotting using BSgenome.TAIR10
2.0 years ago
James W. MacDonald
67k
1
vote
1
reply
1.7k
views
Comment:
Comment: karyoploteR genome coverage plotting using BSgenome.TAIR10
2.0 years ago
James W. MacDonald
67k
0
votes
0
replies
1.7k
views
Comment:
Comment: merge TPM values for same geneID
2.0 years ago
James W. MacDonald
67k
0
votes
1
reply
1.5k
views
Answer:
Answer: Questions about non-model organisms gene enrichment analysis
2.0 years ago
James W. MacDonald
67k
1
vote
0
replies
1.5k
views
Answer:
Answer: Non-model organism , CluserProfiler message "No gene can be mapped"
2.0 years ago
James W. MacDonald
67k
0
votes
3
replies
3.5k
views
Comment:
Comment: DEGreport installation help
2.0 years ago
James W. MacDonald
67k
3
votes
1
reply
1.7k
views
Answer:
Answer: karyoploteR genome coverage plotting using BSgenome.TAIR10
2.0 years ago
James W. MacDonald
67k
0
votes
1
reply
3.5k
views
Answer:
Answer: DEGreport installation help
2.0 years ago
James W. MacDonald
67k
0
votes
0
replies
1.2k
views
Comment:
Comment: CountOverlap
2.0 years ago
James W. MacDonald
67k
1
vote
1
reply
857
views
Answer:
Answer: " 'end' must be >= 'start' - 1" error in cn.mops
2.0 years ago
James W. MacDonald
67k
0
votes
1
reply
1.2k
views
Answer:
Answer: CountOverlap
2.0 years ago
James W. MacDonald
67k
0
votes
0
replies
933
views
Answer:
Answer: expression data
2.0 years ago
James W. MacDonald
67k
1
vote
0
replies
681
views
Comment:
Comment: Error when run scCATCH
2.0 years ago
James W. MacDonald
67k
1
vote
1
reply
681
views
Answer:
Answer: Error when run scCATCH
2.0 years ago
James W. MacDonald
67k
0
votes
1
reply
2.1k
views
Comment:
Comment: Archives prior to 3.15 gone
2.0 years ago
James W. MacDonald
67k
1
vote
1
reply
1.9k
views
Answer:
Answer: transcripts missing from tx2gene
2.0 years ago
James W. MacDonald
67k
0
votes
1
reply
2.1k
views
Comment:
Comment: Archives prior to 3.15 gone
2.0 years ago
James W. MacDonald
67k
8,582 results • Page
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