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1
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1.1k
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Answer:
Answer: genomicElementDistribution function not found
3.3 years ago
James W. MacDonald
67k
1
vote
2
replies
631
views
Difference in mixed test for fry vs mroast
limma
updated 3.3 years ago by
Gordon Smyth
51k • written 3.3 years ago by
James W. MacDonald
67k
0
votes
1
reply
1.6k
views
Answer:
Answer: To retrieve the transcript from gff file with the longest isoform
3.3 years ago
James W. MacDonald
67k
1
vote
1
reply
1.7k
views
Comment:
Comment: Annotation using QSEA package
3.3 years ago
James W. MacDonald
67k
0
votes
1
reply
1.9k
views
Comment:
Comment: how to plot multiple RLEs on same plot?
3.3 years ago
James W. MacDonald
67k
1
vote
1
reply
1.7k
views
Answer:
Answer: Annotation using QSEA package
3.3 years ago
James W. MacDonald
67k
0
votes
1
reply
1.4k
views
Answer:
Answer: Install older version of DESeq2 for use on cluster with older version of R
3.3 years ago
James W. MacDonald
67k
6
votes
1
reply
5.4k
views
Answer:
Answer: edgeR calcNormFactors or normalize with voom?
3.3 years ago
James W. MacDonald
67k
1
vote
1
reply
1.9k
views
Answer:
Answer: how to plot multiple RLEs on same plot?
3.3 years ago
James W. MacDonald
67k
2
votes
1
reply
1.1k
views
Answer:
Answer: How does the empirical Bayes moderation (eBayes) in the limma pipeline work?
3.3 years ago
James W. MacDonald
67k
0
votes
0
replies
877
views
Answer:
Answer: Error with makeOrganismDbFromBiomart
3.3 years ago
James W. MacDonald
67k
0
votes
1
reply
2.1k
views
Answer:
Answer: How to convert .CEL file to .VCF file?
3.3 years ago
James W. MacDonald
67k
0
votes
0
replies
1.3k
views
Answer:
Answer: failing to install the package org.Hs.eg.db in R (version 4.0.5 )
3.3 years ago
James W. MacDonald
67k
1
vote
1
reply
2.4k
views
Comment:
Comment: How to do annotation with Limma
3.3 years ago
James W. MacDonald
67k
1
vote
0
replies
2.4k
views
Comment:
Comment: How to do annotation with Limma
3.3 years ago
James W. MacDonald
67k
1
vote
1
reply
2.4k
views
Comment:
Comment: How to do annotation with Limma
3.3 years ago
James W. MacDonald
67k
1
vote
1
reply
1.4k
views
Answer:
Answer: No counts, just fold change data
3.3 years ago
James W. MacDonald
67k
0
votes
1
reply
1.1k
views
Answer:
Answer: matrix with Salmon gene-level quantifications in DESeq
3.3 years ago
James W. MacDonald
67k
0
votes
0
replies
33k
views
Comment:
Comment: Cannot install packages by BiocManager::install()
3.3 years ago
James W. MacDonald
67k
1
vote
1
reply
1.9k
views
Comment:
Comment: Use of arrayWeights with two treatment groups
3.3 years ago
James W. MacDonald
67k
0
votes
0
replies
611
views
Answer:
Answer: DESeq2 - how to account for patient, batch and condition
3.3 years ago
James W. MacDonald
67k
0
votes
0
replies
6.1k
views
Comment:
Comment: installing older versions of packages
3.3 years ago
James W. MacDonald
67k
0
votes
1
reply
6.1k
views
Comment:
Comment: installing older versions of packages
3.3 years ago
James W. MacDonald
67k
0
votes
2
replies
6.1k
views
Answer:
Answer: installing older versions of packages
3.3 years ago
James W. MacDonald
67k
0
votes
0
replies
1.5k
views
Comment:
Comment: Combining repeated measurements and duplicateCorrelation in LIMMA
3.3 years ago
James W. MacDonald
67k
0
votes
1
reply
2.0k
views
Comment:
Comment: How to run getSeq() on a GRanges object with invalid DNA letters?
3.3 years ago
James W. MacDonald
67k
1
vote
1
reply
1.5k
views
Answer:
Answer: Combining repeated measurements and duplicateCorrelation in LIMMA
3.3 years ago
James W. MacDonald
67k
1
vote
1
reply
1.8k
views
Answer:
Answer: trouble with ENSEMBL ids for Org.Ss.eg.db
3.3 years ago
James W. MacDonald
67k
1
vote
0
replies
1.3k
views
Answer:
Answer: unable to install "org.Hs.eg.db"
3.3 years ago
James W. MacDonald
67k
1
vote
0
replies
3.5k
views
Comment:
Comment: Convert DataFrame to data.frame While Keeping Column Name Syntax
3.4 years ago
James W. MacDonald
67k
2
votes
1
reply
3.5k
views
Answer:
Answer: Convert DataFrame to data.frame While Keeping Column Name Syntax
3.4 years ago
James W. MacDonald
67k
0
votes
1
reply
2.3k
views
Comment:
Comment: How to filter EnsDb into another EnsDb object instead of GRange?
3.4 years ago
James W. MacDonald
67k
1
vote
1
reply
2.3k
views
Comment:
Comment: How to filter EnsDb into another EnsDb object instead of GRange?
3.4 years ago
James W. MacDonald
67k
0
votes
0
replies
2.0k
views
Comment:
Comment: Importing a bed file
3.4 years ago
James W. MacDonald
67k
2
votes
2
replies
2.0k
views
Answer:
Answer: Importing a bed file
3.4 years ago
James W. MacDonald
67k
1
vote
1
reply
2.0k
views
Comment:
Comment: How to run getSeq() on a GRanges object with invalid DNA letters?
3.4 years ago
James W. MacDonald
67k
0
votes
0
replies
2.3k
views
Comment:
Comment: How to filter EnsDb into another EnsDb object instead of GRange?
3.4 years ago
James W. MacDonald
67k
0
votes
1
reply
2.3k
views
Answer:
Answer: How to filter EnsDb into another EnsDb object instead of GRange?
3.4 years ago
James W. MacDonald
67k
0
votes
1
reply
2.0k
views
Comment:
Comment: How to run getSeq() on a GRanges object with invalid DNA letters?
3.4 years ago
James W. MacDonald
67k
3
votes
1
reply
2.0k
views
Answer:
Answer: How to run getSeq() on a GRanges object with invalid DNA letters?
3.4 years ago
James W. MacDonald
67k
1
vote
0
replies
2.3k
views
Comment:
Comment: ColData use only certain variable within
3.4 years ago
James W. MacDonald
67k
1
vote
2
replies
2.3k
views
Comment:
Comment: ColData use only certain variable within
3.4 years ago
James W. MacDonald
67k
1
vote
1
reply
2.3k
views
Comment:
Comment: ColData use only certain variable within
3.4 years ago
James W. MacDonald
67k
0
votes
0
replies
2.4k
views
Answer:
Answer: Can't install KEGGprofile
3.4 years ago
James W. MacDonald
67k
1
vote
1
reply
2.3k
views
Comment:
Comment: ColData use only certain variable within
3.4 years ago
James W. MacDonald
67k
1
vote
2
replies
2.3k
views
Answer:
Answer: ColData use only certain variable within
3.4 years ago
James W. MacDonald
67k
0
votes
0
replies
2.1k
views
Comment:
Comment: DiffBind Normalisation between Narrow/Broad Peaks from different peak callers
3.4 years ago
James W. MacDonald
67k
0
votes
0
replies
1.6k
views
Answer:
Answer: Can't install DESeq2 because of libxml
3.4 years ago
James W. MacDonald
67k
0
votes
0
replies
850
views
Answer:
Answer: Extracting Go-enrichment and pathway analysis from phytozome annotation file
3.4 years ago
James W. MacDonald
67k
0
votes
0
replies
1.4k
views
Answer:
Answer: VariantAnnotation::readVcf not reading variants
3.4 years ago
James W. MacDonald
67k
8,585 results • Page
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