Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Profile
Posts
Awards
Show
all
questions
tools
blogs
news
tutorials
forum
answers
comments
1
vote
0
replies
1.0k
views
Answer:
A: How to normalize RNA-seq when 50% genes are DE? (TMM)
5.5 years ago
James W. MacDonald
67k
0
votes
0
replies
1.1k
views
Answer:
A: The query to the BioMart webservice returned an invalid result: biomaRt expected
5.5 years ago
James W. MacDonald
67k
2
votes
1
reply
1.1k
views
Answer:
A: How to tell a GAlignmentsList singleton is mate1 or mate2
5.5 years ago
James W. MacDonald
67k
0
votes
0
replies
562
views
Answer:
A: Variance for paired design
5.5 years ago
James W. MacDonald
67k
0
votes
1
reply
1.2k
views
Answer:
A: Problem concerning the Probe_Id / ProbeID and illuminaHumanv4PROBEQUALITY
5.5 years ago
James W. MacDonald
67k
0
votes
1
reply
1.4k
views
Answer:
A: makeTxDbFromGFF, GTF columns not included in the TxDb object
5.5 years ago
James W. MacDonald
67k
0
votes
1
reply
2.8k
views
Answer:
A: GenomicRanges error constructing Granges
5.5 years ago
James W. MacDonald
67k
0
votes
2
replies
1.1k
views
Comment:
C: Error in ncol(eset) 'eset.filt' not found
5.5 years ago
James W. MacDonald
67k
0
votes
0
replies
395
views
Answer:
A: add gene names to rlog transformation for heatmap using the library "org.Hs.eg.d
5.5 years ago
James W. MacDonald
67k
1
vote
1
reply
356
views
Answer:
A: Normalizing expression across complex array designs
5.5 years ago
James W. MacDonald
67k
0
votes
1
reply
1.1k
views
Answer:
A: Error in ncol(eset) 'eset.filt' not found
5.5 years ago
James W. MacDonald
67k
0
votes
1
reply
1.3k
views
Comment:
C: HTA 2.0 Differential expression analysis - design question
5.5 years ago
James W. MacDonald
67k
3
votes
1
reply
1.3k
views
Answer:
A: HTA 2.0 Differential expression analysis - design question
5.5 years ago
James W. MacDonald
67k
4
votes
2
replies
2.4k
views
Answer:
A: No method for coercing this S4 class to a vector, as trying to import my own dat
5.5 years ago
James W. MacDonald
67k
3
votes
3
replies
1.7k
views
Answer:
A: Getting CDSCHROM values from ENSEMBL/SYMBOL keys using mapIds from TxDb.Hsapiens
5.5 years ago
James W. MacDonald
67k
3
votes
1
reply
1.3k
views
Answer:
A: Error in summarizeOverlaps
5.5 years ago
James W. MacDonald
67k
2
votes
1
reply
1.2k
views
Iterating over BAM file by genomic chunk
GenomicAlignments
updated 5.5 years ago by
Martin Morgan
25k • written 5.5 years ago by
James W. MacDonald
67k
0
votes
1
reply
2.6k
views
Comment:
C: Applying NetAffx biological annotation to Affymetrix gene expression dataset
5.5 years ago
James W. MacDonald
67k
0
votes
1
reply
2.6k
views
Comment:
C: Applying NetAffx biological annotation to Affymetrix gene expression dataset
5.5 years ago
James W. MacDonald
67k
0
votes
2
replies
2.6k
views
Comment:
C: Applying NetAffx biological annotation to Affymetrix gene expression dataset
5.5 years ago
James W. MacDonald
67k
0
votes
1
reply
2.6k
views
Comment:
C: Applying NetAffx biological annotation to Affymetrix gene expression dataset
5.5 years ago
James W. MacDonald
67k
0
votes
0
replies
767
views
Answer:
A: Differentially expressed genes in rice affymetrix data and annotation
5.5 years ago
James W. MacDonald
67k
1
vote
0
replies
757
views
Answer:
A: Microaaray data analysis
5.5 years ago
James W. MacDonald
67k
2
votes
1
reply
2.6k
views
Answer:
A: Applying NetAffx biological annotation to Affymetrix gene expression dataset
5.5 years ago
James W. MacDonald
67k
0
votes
0
replies
2.2k
views
Comment:
C: How to access normalized data in the NanoStringDiff package?
5.5 years ago
James W. MacDonald
67k
0
votes
0
replies
2.9k
views
Answer:
A: Is the STRINGdb server down?
5.5 years ago
James W. MacDonald
67k
1
vote
0
replies
1.0k
views
Comment:
C: svaseq - over adjustment
5.5 years ago
James W. MacDonald
67k
1
vote
0
replies
1.4k
views
Comment:
C: Number and percent of mapped reads from RNA seq analysis.
5.5 years ago
James W. MacDonald
67k
1
vote
0
replies
457
views
Answer:
A: differential expression analysis of merged dataset
5.5 years ago
James W. MacDonald
67k
1
vote
0
replies
804
views
Answer:
A: Annotating rice affymetrix data from different gse through biomart
5.5 years ago
James W. MacDonald
67k
0
votes
1
reply
2.1k
views
Comment:
C: GO.db installation problems with BiocManager in R
5.6 years ago
James W. MacDonald
67k
2
votes
1
reply
1.5k
views
Answer:
A: AnnotationData Packages for GPL2507 Sentrix Human-6 Expression BeadChip
5.6 years ago
James W. MacDonald
67k
1
vote
0
replies
2.8k
views
Answer:
A: TxDb.Hsapiens.UCSC.hg38.knownGene In install.packages(pkgs = doing, lib = lib,
5.6 years ago
James W. MacDonald
67k
0
votes
1
reply
411
views
Comment:
C: Batch query to map gene identifier to chromosome location using plant db
5.6 years ago
James W. MacDonald
67k
0
votes
1
reply
1.8k
views
Answer:
A: BiocManager::install("hgu95av2.db") errror while Installin the hgu95avs.db packa
5.6 years ago
James W. MacDonald
67k
2
votes
0
replies
1.0k
views
Answer:
A: Do TxDb objects contain info about non-transcriptionally active regions?
5.6 years ago
James W. MacDonald
67k
0
votes
0
replies
681
views
Answer:
A: error after normalizing data
5.6 years ago
James W. MacDonald
67k
1
vote
1
reply
992
views
Comment:
C: ReportingTools publish(): no image when .modifyDF argument is included
5.6 years ago
James W. MacDonald
67k
0
votes
1
reply
992
views
Answer:
A: ReportingTools publish(): no image when .modifyDF argument is included
5.6 years ago
James W. MacDonald
67k
1
vote
3
replies
1.4k
views
Answer:
A: Heatmap vs heatmap.2
5.6 years ago
James W. MacDonald
67k
0
votes
0
replies
1.4k
views
Comment:
C: Correct annotation R package for human clariom array analysis
5.6 years ago
James W. MacDonald
67k
0
votes
1
reply
1.4k
views
Comment:
C: Correct annotation R package for human clariom array analysis
5.6 years ago
James W. MacDonald
67k
1
vote
1
reply
1.4k
views
Answer:
A: Correct annotation R package for human clariom array analysis
5.6 years ago
James W. MacDonald
67k
1
vote
0
replies
833
views
Answer:
A: Valid to normalise MethylumiSet using minfi?
5.6 years ago
James W. MacDonald
67k
5
votes
0
replies
1.4k
views
Answer:
A: Limma - Using removeBatchEffect before differential expression analysis
5.6 years ago
James W. MacDonald
67k
0
votes
0
replies
692
views
Answer:
A: what do these DNA alphabet means ? "-", "+", "."
5.6 years ago
James W. MacDonald
67k
0
votes
0
replies
1.7k
views
Answer:
A: hyperGTest not working on custom annotation package
5.6 years ago
James W. MacDonald
67k
0
votes
1
reply
2.1k
views
Comment:
C: go_bp table in custom OrgDb package
5.6 years ago
James W. MacDonald
67k
0
votes
1
reply
1.7k
views
Answer:
A: hyperGTest not working on custom annotation package
5.6 years ago
James W. MacDonald
67k
0
votes
1
reply
2.1k
views
Answer:
A: go_bp table in custom OrgDb package
5.6 years ago
James W. MacDonald
67k
8,592 results • Page
59 of 172
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6