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Created A Post With More Than 5 Votes
Awarded 394 times (see all awards). Earned by the
following contributors:
3 years, 12 months ago
WEHI, Melbourne, Australia
A: Possible ways of performing differential gene expression and analysis of RNA-Seq
4 years, 1 month ago
WEHI, Melbourne, Australia
A: correcting the batch effects in Limma and SVA
4 years, 1 month ago
WEHI, Melbourne, Australia
A: How barcode-plot enrichment is calculated?
4 years, 1 month ago
WEHI, Melbourne, Australia
A: Why different filtering criteria using CPM to filter the RNA-seq count data in e
4 years, 1 month ago
WEHI, Melbourne, Australia
A: Different logFC (log2foldchange) values for genes from limma-voom and other too
4 years, 1 month ago
WEHI, Melbourne, Australia
A: Differential expression analysis starting from TPM data
4 years, 1 month ago
WEHI, Melbourne, Australia
A: Using voomWithQualityWeights for differential expression analysis.
4 years, 1 month ago
WEHI, Melbourne, Australia
A: Appropriate ways to filter counts data for voom/limma
4 years, 1 month ago
WEHI, Melbourne, Australia
A: Fit a multinomial to RNA-seq count data
4 years, 1 month ago
WEHI, Melbourne, Australia
A: How to remove more than two batches in my data-sets
4 years, 1 month ago
WEHI, Melbourne, Australia
A: when to apply quantile normalization with voom in limma/voom framework with RNA-
4 years, 1 month ago
WEHI, Melbourne, Australia
A: EdgeR cpm: factor of 2 when adjusting library size?
4 years, 1 month ago
WEHI, Melbourne, Australia
Answer: gene dispersion, what does it mean?
4 years, 1 month ago
WEHI, Melbourne, Australia
A: DESeq and Limma+Voom Normalization for Rna-Seq Data Using Ercc Spike-In
4 years, 1 month ago
WEHI, Melbourne, Australia
A: Normalization methodology in DESeq/DESeq2 vs edgeR
4 years, 1 month ago
WEHI, Melbourne, Australia
A: Do the outputs of Limma's competitive gene set methods (camera, romer) require a
4 years, 1 month ago
WEHI, Melbourne, Australia
A: Statistical analysis of Spectral count data : edgeR, limma or others ?
4 years, 1 month ago
WEHI, Melbourne, Australia
A: Correct assumptions of using limma moderated t-test
4 years, 1 month ago
WEHI, Melbourne, Australia
A: Removing continuous covariate effects in limma analysis
4 years, 1 month ago
WEHI, Melbourne, Australia
A: Confidence intervals on edgeR logFC
4 years, 1 month ago
WEHI, Melbourne, Australia
A: RNA-Seq, generate batch-free count matrix
4 years, 1 month ago
WEHI, Melbourne, Australia
Differences between limma voom E values and edgeR cpm values?
4 years, 1 month ago
WEHI, Melbourne, Australia
Answer: Differential expression of FPKM from RNA-seq data using limma and voom()
4 years, 1 month ago
WEHI, Melbourne, Australia
limma moderated t-statistics and B-statistics
4 years, 1 month ago
WEHI, Melbourne, Australia
A: conceptual question about FDR, FDR adjusted p-value and q-value
5 years, 10 months ago
WEHI, Melbourne, Australia
Volcanoplot with limma - RAW P-values or Adj.P-Values
5 years, 10 months ago
WEHI, Melbourne, Australia
simultaneous use of robust and weighting methods in limma
5 years, 10 months ago
WEHI, Melbourne, Australia
How barcode-plot enrichment is calculated?
5 years, 10 months ago
WEHI, Melbourne, Australia
Removing continuous covariate effects in limma analysis
5 years, 12 months ago
WEHI, Melbourne, Australia
How barcode-plot enrichment is calculated?
5 years, 12 months ago
WEHI, Melbourne, Australia
Removing continuous covariate effects in limma analysis
6 years, 2 months ago
WEHI, Melbourne, Australia
Why different filtering criteria using CPM to filter the RNA-seq count data in edgeR have so much influence on the number of DE genes?
6 years, 2 months ago
WEHI, Melbourne, Australia
How barcode-plot enrichment is calculated?
6 years, 2 months ago
WEHI, Melbourne, Australia
BH vs BY in p.adjust + FDR interpretation
6 years, 3 months ago
WEHI, Melbourne, Australia
BH vs BY in p.adjust + FDR interpretation
6 years, 3 months ago
WEHI, Melbourne, Australia
Why different filtering criteria using CPM to filter the RNA-seq count data in edgeR have so much influence on the number of DE genes?
7 years, 5 months ago
WEHI, Melbourne, Australia
RNA-Seq, generate batch-free count matrix
7 years, 5 months ago
WEHI, Melbourne, Australia
Fit a multinomial to RNA-seq count data
7 years, 5 months ago
WEHI, Melbourne, Australia
Differential expression of FPKM from RNA-seq data using limma and voom()
7 years, 5 months ago
WEHI, Melbourne, Australia
Why different filtering criteria using CPM to filter the RNA-seq count data in edgeR have so much influence on the number of DE genes?
7 years, 5 months ago
WEHI, Melbourne, Australia
Do the outputs of Limma's competitive gene set methods (camera, romer) require a mutliple testing correction?
7 years, 5 months ago
WEHI, Melbourne, Australia
Differences between limma voom E values and edgeR cpm values?
7 years, 5 months ago
WEHI, Melbourne, Australia
BH vs BY in p.adjust + FDR interpretation
7 years, 5 months ago
WEHI, Melbourne, Australia
BH vs BY in p.adjust + FDR interpretation
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