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Chris ▴ 10
3 weeks, 3 days ago
United States
Why p value inconsistent when using different number of pathway score?
Chris ▴ 10
1 month, 2 weeks ago
United States
The difference when using Limma compare between 3 conditions vs 2 conditions
Maria Doyle ▴ 70
2 months ago
Ireland
European Bioconductor Conference 2023 planning
paria.alipour • 0
2 months, 3 weeks ago
Canada
How to calculate p value when comparing two sets of DEGs and not applying interaction
Bine ▴ 40
3 months, 4 weeks ago
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SingleR annotation of several slots/patients
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4 months, 2 weeks ago
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Reading GFF file and pre-processing, run iinfer_syntenet(), input and output
Bine ▴ 40
5 months ago
UK
JoinLayers function for Seurat Object for annotation with SingleR
marinaw ▴ 20
5 months ago
Canada
Understanding "gene ratio" when using plotEnrich(c())
Hussain • 0
5 months ago
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Conducting pair-wise comparison in DESeq2?
bas_work ▴ 30
5 months, 2 weeks ago
Netherlands
Ensembl down???
triZZla • 0
5 months, 3 weeks ago
Germany
Timely differentially expressed genes
shepherl 3.9k
6 months, 1 week ago
United States
Nominations for Bioconductor 2022 Awards!
kjngo ▴ 40
6 months, 1 week ago
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rohitsatyam102 ▴ 20
6 months, 1 week ago
India
sampling random regions of same nucleotide composition from hg38 genome
Jonathan ▴ 10
6 months, 2 weeks ago
United States
Batch correction and repeated measures
rohitsatyam102 ▴ 20
6 months, 2 weeks ago
India
Accounting for Batch effect reduces DEGs drastically
Abhishek ▴ 20
6 months, 3 weeks ago
Canada
biomaRt not working - lazy table error
jovel_juan ▴ 30
6 months, 3 weeks ago
Canada
object HPOGENE is not exported by namespace HPO.db
nhaus ▴ 40
6 months, 4 weeks ago
Switzerland
getLDS causes "biomaRt has encountered an unexpected server error"
Ankit ▴ 20
7 months, 2 weeks ago
Italy
Blood cell composition adjustment in methylation EPIC array: ChAMP
Weiqian ▴ 10
7 months, 2 weeks ago
United States
Questions about the false positives indicated by DESeq2 and QQ plot
Daniel E. Weeks ▴ 30
7 months, 3 weeks ago
Pittsburgh, Pennsylvania, United States…
Gviz: UcscTrack and "GC Percent" information
Koki ▴ 10
8 months ago
Japan
Speeding up of DelayedArray::write_block()
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8 months ago
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8 months ago
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List of Deprecated Packages for Bioc3.18
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8 months, 3 weeks ago
WEHI, Melbourne, Australia
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9 months, 1 week ago
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Get MANE transcripts from TxDb.Hsapiens.UCSC.hg38.knownGene
Sara • 0
9 months, 2 weeks ago
Belgium
removing the batch effect for vst counts and defining the batches in removeBatchEffect function
Chris ▴ 10
10 months ago
United States
Help with error DiffBind
Sam ▴ 10
10 months ago
Jerusalem
DiffBind does not use DESeq2 MLE estimation of fold change
rae.alshammari ▴ 10
10 months ago
United States
Warning messages in detecting P-values
chiwut.wong • 0
10 months ago
United States
Is it proper to compare two WGCNA matrixes if they were raised to different power (soft threshold)?
Luca • 0
10 months ago
Italy
RNA seq differential expression analysis for large sample size
mohammedtoufiq91 ▴ 10
10 months ago
United States
Question about RNAseq analysis in EdgeR to identify common and donor specific differentially expressed genes
Chris ▴ 10
10 months, 1 week ago
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Reading data into chromVAR
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10 months, 2 weeks ago
Denmark
rowsum or similar for RleArray?
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10 months, 2 weeks ago
United States
Gene set analysis: GSVA, Z-Score, and fold-changes
abhisek001 • 0
10 months, 4 weeks ago
India
Query regarding to create custom organism database with AnnotationForge package (AnnotationForge::makeOrgPackageFromNCBI)
Theo ▴ 10
11 months ago
Germany
ranking the DeSeq2 results using t-values?
Assa Yeroslaviz ★ 1.5k
11 months, 1 week ago
Germany
scran ScoreMarkers throws a warning
Chris ▴ 10
11 months, 1 week ago
United States
Interpret plot from DiffBind
Lluís Revilla Sancho ▴ 730
11 months, 2 weeks ago
European Union
P-value histogram of testLinearModel is not uniform
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11 months, 3 weeks ago
Ireland
BioC2023 abstract submission is now open!
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11 months, 3 weeks ago
Cambridge, MA
SummarizedExperiment is now warning on attach about `read_block` namespace conflict
Sabiha ▴ 20
11 months, 3 weeks ago
United States
Visualization of negative log CPM values
James W. MacDonald 66k
12 months ago
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Installing densvis on a Singularity container
Sabiha ▴ 20
12 months ago
United States
Can we use rlog or vst data values in limma for differential expression analysis?
mohammedtoufiq91 ▴ 10
12 months ago
United States
Question about setting threshold using filtering by expression on genes in edgeR
Zainab ▴ 10
12 months ago
United States
Merging samples from different sequencing runs
Bogdan ▴ 670
1 year ago
Palo Alto, CA, USA
about baseMean in DEseq2
7,519 results • Page 1 of 151
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