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12 years, 10 months ago
WEHI, Melbourne, Australia
using offsets from EDASeq and cqn for edgeR
13 years ago
WEHI, Melbourne, Australia
detailed analysis process of Comparisons Both Between and Within Subjects of edgeR
13 years, 1 month ago
WEHI, Melbourne, Australia
Equivalent of contrasts.fit & multi-contrast decideTests for edgeR?
13 years, 1 month ago
WEHI, Melbourne, Australia
Help interpreting many contrasts in one contrast versus many individual contrast matrices
13 years, 1 month ago
WEHI, Melbourne, Australia
How to design matrix on edgeR to study genotype x environmental interaction
13 years, 2 months ago
WEHI, Melbourne, Australia
LIMMA: Help needed for limma analysis with a complex design
13 years, 2 months ago
WEHI, Melbourne, Australia
limma topTable doesn't work without replicates [was: Help with limma]
13 years, 2 months ago
WEHI, Melbourne, Australia
limma topTable doesn't work without replicates [was: Help with limma]
13 years, 3 months ago
WEHI, Melbourne, Australia
Mentored Projects at Bioconductor
13 years, 4 months ago
WEHI, Melbourne, Australia
Limma normalization error and loess.R segmentation type fault (windows)
13 years, 4 months ago
WEHI, Melbourne, Australia
Variance stabilization of m-values
13 years, 4 months ago
WEHI, Melbourne, Australia
Can I adjust family relationship in Limma?
13 years, 6 months ago
WEHI, Melbourne, Australia
edgeR and tagwise dispersion: overcorrection for multiple tests?
13 years, 7 months ago
WEHI, Melbourne, Australia
reading single channel Agilent data with limma [was arrayQualityMetrics doesn't work...]
13 years, 7 months ago
WEHI, Melbourne, Australia
Expt. design question on optimal number of replicates (in edgeR or elsewhere)
13 years, 7 months ago
WEHI, Melbourne, Australia
technical and biological replicates in the same Exprset - Agi4x44
13 years, 7 months ago
WEHI, Melbourne, Australia
technical and biological replicates in the same Exprset - Agi4x44
13 years, 8 months ago
WEHI, Melbourne, Australia
Design and not estimable coefficients
13 years, 8 months ago
WEHI, Melbourne, Australia
Filtering Codes (analysing Agilent 8x60k using limma)
13 years, 8 months ago
WEHI, Melbourne, Australia
nested factors in edgeR [was: something wrong with my design matrix in edgeR]
13 years, 9 months ago
WEHI, Melbourne, Australia
question about edgeR and Poisson model: common dispersion is too low
13 years, 9 months ago
WEHI, Melbourne, Australia
edgeR-DeSeq - inconsistency between Variance and Coefficient of Variation
13 years, 10 months ago
WEHI, Melbourne, Australia
Summarizing Single-channel Agilent data
13 years, 11 months ago
WEHI, Melbourne, Australia
How to specify factors for a RCBD in edgeR
13 years, 11 months ago
WEHI, Melbourne, Australia
Problem with limma's topTable lfc filter when more than 1 contrast is output
14 years ago
WEHI, Melbourne, Australia
Contrasts for 3x2 factorial experiment in R/edgeR
14 years ago
WEHI, Melbourne, Australia
limma - 2-color agilent microarray, GO annotation
14 years, 1 month ago
WEHI, Melbourne, Australia
Limma Dual Color Agilent : Mixed model or not?
14 years, 1 month ago
WEHI, Melbourne, Australia
edgeR - R script - results compared to DESeq
14 years, 1 month ago
WEHI, Melbourne, Australia
edgeR: what to do with no replicates
14 years, 2 months ago
WEHI, Melbourne, Australia
edgeR - coefficients in 3-factor experiment, complex contrasts and decideTestsDGE
14 years, 3 months ago
WEHI, Melbourne, Australia
Problems with edgeR for differential expression
14 years, 3 months ago
WEHI, Melbourne, Australia
input agilent single-channel data (using limma package)
14 years, 6 months ago
WEHI, Melbourne, Australia
Questions on doing EdgeR Analysis of Timeseries Data
14 years, 7 months ago
WEHI, Melbourne, Australia
limma analysis of 2-color experiment with tech reps [was: Help with]
14 years, 8 months ago
WEHI, Melbourne, Australia
help request. repost Define alternate design matrix in R
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