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2 years, 7 months ago
Seattle, WA, United States
BSgenome package for T2T-CHM13v2.0 assembly and SNPlocs package for dbSNP155
5 years, 3 months ago
Seattle, WA, United States
how to obtain base counts from BAM file at specific genomic coordinates
5 years, 10 months ago
Seattle, WA, United States
how to obtain base counts from BAM file at specific genomic coordinates
5 years, 10 months ago
Seattle, WA, United States
how to obtain base counts from BAM file at specific genomic coordinates
6 years, 2 months ago
Seattle, WA, United States
BioStrings for current R: RE: BSgenomeForge seed file - seqnames field
6 years, 2 months ago
Seattle, WA, United States
unique, duplicated, order, etc... on a GRanges object
6 years, 2 months ago
Seattle, WA, United States
how to obtain base counts from BAM file at specific genomic coordinates
6 years, 4 months ago
Seattle, WA, United States
New Bioconductor package for dbSNP151
7 years, 4 months ago
Seattle, WA, United States
overlap regions between two GRanges (or GRangesList)
7 years, 4 months ago
Seattle, WA, United States
Seed file error: RE: BioStrings for current R: RE: BSgenomeForge seed file - seqnames field
7 years, 4 months ago
Seattle, WA, United States
unique, duplicated, order, etc... on a GRanges object
7 years, 4 months ago
Seattle, WA, United States
how to obtain base counts from BAM file at specific genomic coordinates
8 years, 7 months ago
Seattle, WA, United States
how to obtain base counts from BAM file at specific genomic coordinates
9 years ago
Seattle, WA, United States
'version' is missing error when running makeTxDbPackageFromUCSC
9 years, 4 months ago
Seattle, WA, United States
dbSNP build for R package SNPlocs.Hsapiens.dbSNP.20080617
10 years, 3 months ago
Seattle, WA, United States
subseq with iranges on reverse strand
10 years, 5 months ago
Seattle, WA, United States
UCSC data anomaly in 50638 transcript(s): the cds cumulative length is
10 years, 7 months ago
Seattle, WA, United States
Trying to use BSgenome.Hsapiens.NCBI.GRCh38
10 years, 7 months ago
Seattle, WA, United States
A question about the function readGAlignmentPairs in GenomicRnages package
10 years, 10 months ago
Seattle, WA, United States
I need help making a dcf seed file to encapsulate a genome assembly im using.
10 years, 11 months ago
Seattle, WA, United States
Easy way to convert CharacterList to character, collapsing each element?
10 years, 11 months ago
Seattle, WA, United States
Question about MEDIPS extend parameter : RE: Success: RE: Seed file error: RE: BioStrings for current R: RE: BSgenomeForge seed file - seqnames field
11 years ago
Seattle, WA, United States
Fwd: [devteam-bioc] information about genefilter package
11 years, 1 month ago
Seattle, WA, United States
Fwd: BioStrings PairwiseAlignment deletion() insertion() function
11 years, 6 months ago
Seattle, WA, United States
Deleting object rows while looping - II
11 years, 7 months ago
Seattle, WA, United States
Finding mismatches between reads and reference sequence
11 years, 7 months ago
Seattle, WA, United States
Limit on number of sequence files for forging a BSgenome
11 years, 10 months ago
Seattle, WA, United States
countMatches() (was: table for GenomicRanges)
11 years, 11 months ago
Seattle, WA, United States
Why does a call to "unique" removes a DNAStringSet names?
11 years, 11 months ago
Seattle, WA, United States
IRanges/List oddity: do.call of `c` on a list of IRangesList returns "list" only when the list is named
12 years, 4 months ago
Seattle, WA, United States
Biostring: print sequence alignment to file
12 years, 6 months ago
Seattle, WA, United States
question about BSgenome and C.pombe genome, absent in USCS
12 years, 8 months ago
Seattle, WA, United States
[Hinxton #251937] RE: GenomicFeatures::makeTranscriptDbFromBiomart - BioMart data anomaly: for some transcripts, the cds cumulative length inferred from the exon and UTR info doesn
12 years, 8 months ago
Seattle, WA, United States
homopolymer gap extension penalty in Biostrings
12 years, 10 months ago
Seattle, WA, United States
shift function (GenomicRanges, IRanges), issue with negative start values and circular DNA
13 years, 1 month ago
Seattle, WA, United States
[Bioc-sig-seq] as.data.frame on GRanges object with DNAStringSet in values
13 years, 1 month ago
Seattle, WA, United States
[Bioc-sig-seq] first remove low quality or adaptor
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