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Created An Answer That Has Been Accepted
Awarded 5091 times (see all awards). Earned by the
following contributors:
1 week, 5 days ago
WEHI, Melbourne, Australia
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
1 month, 2 weeks ago
WEHI, Melbourne, Australia
Answer: Should voomWithQualityWeights still be used when the sample-specific weights var
1 month, 3 weeks ago
WEHI, Melbourne, Australia
Answer: Limma : paired samples leading to unexpected estimates
2 months ago
WEHI, Melbourne, Australia
Answer: Transcript expression analysis using EdgeR
3 months, 3 weeks ago
WEHI, Melbourne, Australia
Answer: limma duplicateCorrelation appropriate where some blocks cross condition and som
5 months, 2 weeks ago
WEHI, Melbourne, Australia
Answer: how to use `arrayWeightsQuick()`?
6 months, 1 week ago
WEHI, Melbourne, Australia
Answer: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with
9 months, 2 weeks ago
WEHI, Melbourne, Australia
Answer: RSubread output significantly different from bash Subread output
9 months, 4 weeks ago
WEHI, Melbourne, Australia
Answer: Crossover design with limma
10 months, 1 week ago
WEHI, Melbourne, Australia
Answer: Is it recommended to analyze different tissues together when using edgeR
10 months, 1 week ago
WEHI, Melbourne, Australia
Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
10 months, 2 weeks ago
WEHI, Melbourne, Australia
Answer: Limma- Print-tip loess normalisation-printer layout information does not match M
11 months ago
WEHI, Melbourne, Australia
Answer: LIMMA Differing P-Values for Treatment-Contrast Parameterization vs Group-Means
11 months, 1 week ago
WEHI, Melbourne, Australia
Answer: Zero intra-block correlation in RRBS analysis using voomLmFit with block
11 months, 2 weeks ago
WEHI, Melbourne, Australia
Answer: How to subset voomLmFit (MArrayLM) object?
11 months, 3 weeks ago
WEHI, Melbourne, Australia
Answer: edgeR 4.2.1 compression bug: a minimally reproducible snippet
1 year ago
WEHI, Melbourne, Australia
Answer: voom does not seem to properly correct for library size
1 year, 1 month ago
WEHI, Melbourne, Australia
Answer: using limma trend workflow in CAMERA
1 year, 1 month ago
WEHI, Melbourne, Australia
Answer: One-sided tests with CAMERA-PR
1 year, 1 month ago
WEHI, Melbourne, Australia
Answer: RUV - Does my data need further normalisation?
1 year, 2 months ago
WEHI, Melbourne, Australia
Answer: LIMMA 2x2 Factorial Design with Paired Samples
1 year, 3 months ago
WEHI, Melbourne, Australia
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
1 year, 3 months ago
WEHI, Melbourne, Australia
Answer: Warning message when running limma with covariates
1 year, 4 months ago
WEHI, Melbourne, Australia
Answer: How to correctly adjust for gender in edgeR
1 year, 5 months ago
WEHI, Melbourne, Australia
Answer: Why p value inconsistent when using different number of pathway score?
1 year, 5 months ago
WEHI, Melbourne, Australia
Answer: FilterByExpr low counts with small sample size
1 year, 5 months ago
WEHI, Melbourne, Australia
Answer: Light difference when using coef vs omit a group when compare 3 groups.
1 year, 5 months ago
WEHI, Melbourne, Australia
Answer: limma models out of memory issue on Slurm HPC
1 year, 5 months ago
WEHI, Melbourne, Australia
Answer: Differing results from plotMDS and PCAtools
1 year, 5 months ago
WEHI, Melbourne, Australia
Answer: The difference when using Limma compare between 3 conditions vs 2 conditions
1 year, 6 months ago
WEHI, Melbourne, Australia
Answer: edgeR, 3 x 2 design with a batch effect and contrasts
1 year, 6 months ago
WEHI, Melbourne, Australia
Answer: Question about extracting co-efficients for pairwise comparisons in edgeR
1 year, 6 months ago
WEHI, Melbourne, Australia
Answer: Constrast for Time Course Experiments using Limma
1 year, 7 months ago
WEHI, Melbourne, Australia
Answer: Confusion about LFC using contrasts weights in EdgeR
1 year, 7 months ago
WEHI, Melbourne, Australia
Answer: Normalization factors when there is a possible unidirectional expression
1 year, 7 months ago
WEHI, Melbourne, Australia
Answer: How does one test for interactions in EdgeR?
1 year, 7 months ago
WEHI, Melbourne, Australia
Answer: Design matrix after RUVg correction
1 year, 7 months ago
WEHI, Melbourne, Australia
Answer: Longitudinal analysis in Limma
1 year, 7 months ago
WEHI, Melbourne, Australia
Answer: How to get normalized values for methylation counts in edgeR
1 year, 7 months ago
WEHI, Melbourne, Australia
Answer: Limma design for 3 replicated time courses comparing treatment vs placebo
1 year, 7 months ago
WEHI, Melbourne, Australia
Answer: voom with quality weights after RUV correction
1 year, 7 months ago
WEHI, Melbourne, Australia
Answer: Using limma for controlling age variable
1 year, 8 months ago
WEHI, Melbourne, Australia
Answer: [BUG] Rsubread::featureCounts quirk in CORE files: different target list orderin
1 year, 8 months ago
WEHI, Melbourne, Australia
Answer: Monotonic genes in results of differential gene expression analysis
1 year, 8 months ago
WEHI, Melbourne, Australia
Answer: EdgeR: Should I include all samples/conditions in my dispersion estimation while
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