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following contributors:
6 years, 2 months ago
The city by the bay
scater::runPCA() errors on DelayedMatrix (DelayedArray:::.check_Ops_vector_arg_length)
6 years, 2 months ago
The city by the bay
A: using limma and edgeR for differential expression of Drop-seq/10xGenomics scRNA-
6 years, 2 months ago
The city by the bay
How to identify real cells in 10X RNA-seq ?
6 years, 2 months ago
The city by the bay
scater::runPCA() errors on DelayedMatrix (DelayedArray:::.check_Ops_vector_arg_length)
6 years, 2 months ago
The city by the bay
A: Feedback on edgeR model setup: identifying sex-by-tissue effects
6 years, 2 months ago
The city by the bay
scater::runPCA() errors on DelayedMatrix (DelayedArray:::.check_Ops_vector_arg_length)
6 years, 2 months ago
The city by the bay
A: diffHic presplit_map.py pysam.SamtoolsError
6 years, 3 months ago
The city by the bay
A: Combining counts from non-replicate samples in RNA-Seq analysis for a synergisti
6 years, 3 months ago
The city by the bay
A: Time course experiment using limma with voom
6 years, 3 months ago
The city by the bay
A: Small differences in limma with and without contrast matrix
6 years, 3 months ago
The city by the bay
A: Is logFC a log2 fold change or some other base in scran::findMarkers
6 years, 3 months ago
The city by the bay
A: single cell data: adding random effects for subject with multilevel experiment d
6 years, 4 months ago
The city by the bay
A: scater::runPCA() errors on DelayedMatrix (DelayedArray:::.check_Ops_vector_arg_l
6 years, 5 months ago
The city by the bay
A: Unable to change point size in plotExpression()
6 years, 5 months ago
The city by the bay
A: ERROR - Size factors should be positive real numbers (using normalize() function
6 years, 5 months ago
The city by the bay
A: Bioconductor with RPKM counts or Raw counts
6 years, 5 months ago
The city by the bay
A: Association analysis between gene expression and Phenotype
6 years, 6 months ago
The city by the bay
A: RNA-seq Statstical Models and Transcriptional Amplification
6 years, 6 months ago
The city by the bay
A: normalization for infected homogenious cell populations
6 years, 7 months ago
The city by the bay
A: HDF5Array Single cell experiment objects - can on-disk files change?
6 years, 7 months ago
The city by the bay
A: LIMMA time series spline model.matrix design setup
6 years, 8 months ago
The city by the bay
EdgeR - blocking for multiple factors at once - Errors
6 years, 8 months ago
The city by the bay
scRNA-seq : Classification of cell cycle phase
6 years, 8 months ago
The city by the bay
Understanding and creating various comparisons with model.matrix in limma regarding microarrays
6 years, 8 months ago
The city by the bay
limma barcodeplot(): calculation of enrichment score
6 years, 8 months ago
The city by the bay
Is logFC a log2 fold change or some other base in scran::findMarkers
6 years, 8 months ago
The city by the bay
RNA-seq Statstical Models and Transcriptional Amplification
6 years, 8 months ago
The city by the bay
Problem with annotating ENSEMBLE IDs to GENE SYMBOL with AnnotationDBI mapIDs
6 years, 8 months ago
The city by the bay
Building contrasts for combined treatment groups to compare to a control
6 years, 8 months ago
The city by the bay
adding a description column to glmTreat output
6 years, 8 months ago
The city by the bay
Representative gene expression value in one condition with several replicates
6 years, 8 months ago
The city by the bay
csaw::combineTests: Error: length(ids) == nrow(tab) is not TRUE
6 years, 8 months ago
The city by the bay
edgeR normalisation factors different between experimental groups
6 years, 8 months ago
The city by the bay
Re-numbering blocking IDs on paired samples with duplicateCorrelation or design covariate
6 years, 8 months ago
The city by the bay
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
6 years, 8 months ago
The city by the bay
scater::runPCA() errors on DelayedMatrix (DelayedArray:::.check_Ops_vector_arg_length)
6 years, 8 months ago
The city by the bay
use only lib size as normalizing factor in edgeR
6 years, 8 months ago
The city by the bay
Packages employing RangedSummarizedExperiment objects
6 years, 8 months ago
The city by the bay
How to identify real cells in 10X RNA-seq ?
6 years, 8 months ago
The city by the bay
applying voom + limma to a block factor design in RNA-seq experiment
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