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Created An Answer That Has Been Accepted
Awarded 5091 times (see all awards). Earned by the
following contributors:
7 years, 2 months ago
The city by the bay
A: DE analysis when large portion of transcriptome is changed
7 years, 2 months ago
The city by the bay
A: Error to rename seqlevels in Granges interactions
7 years, 2 months ago
The city by the bay
A: edgeR: problem with the quasi-likelihood F-test
7 years, 3 months ago
The city by the bay
A: How to extract genes with greatest BCV?
7 years, 3 months ago
The city by the bay
A: Problem with annotating ENSEMBLE IDs to GENE SYMBOL with AnnotationDBI mapIDs
7 years, 3 months ago
The city by the bay
A: EdgeR - How to set up the design matrix for a multifactorial experimental design
7 years, 3 months ago
The city by the bay
A: Getting Significance for second factor (bioreplicate/subject) when using limma.
7 years, 3 months ago
The city by the bay
adding a description column to glmTreat output
7 years, 3 months ago
The city by the bay
edgeR normalisation factors different between experimental groups
7 years, 3 months ago
The city by the bay
csaw::combineTests: Error: length(ids) == nrow(tab) is not TRUE
7 years, 3 months ago
The city by the bay
Problem with annotating ENSEMBLE IDs to GENE SYMBOL with AnnotationDBI mapIDs
7 years, 3 months ago
The city by the bay
Building contrasts for combined treatment groups to compare to a control
7 years, 3 months ago
The city by the bay
Representative gene expression value in one condition with several replicates
7 years, 3 months ago
The city by the bay
A: paired two groups comparison using limma
7 years, 3 months ago
The city by the bay
A: Error when reading data with DropletUtils::read10xCounts
7 years, 4 months ago
The city by the bay
A: Tximport of quasi-alignment-based RNAseq quantification (Salmon) for use with ed
7 years, 4 months ago
The city by the bay
Building contrasts for combined treatment groups to compare to a control
7 years, 4 months ago
The city by the bay
adding a description column to glmTreat output
7 years, 4 months ago
The city by the bay
Representative gene expression value in one condition with several replicates
7 years, 4 months ago
The city by the bay
A: CQN and EdgeR Library Size for Normalization
7 years, 4 months ago
The city by the bay
A: Finding genes respond differently to treatment between many genotype comparison
7 years, 5 months ago
The city by the bay
A: EdgeR: Prior degrees of freedom effect on tag wise dispersion
7 years, 5 months ago
The city by the bay
A: edgeR/DGEList add assays to a DGEList like in SummarizedExperiment
7 years, 5 months ago
The city by the bay
A: edgeR error when trying to filter peaks with low read counts
7 years, 5 months ago
The city by the bay
A: edgeR normalisation factors different between experimental groups
7 years, 7 months ago
The city by the bay
A: SingleCellExperiment object cannot be used by Scater package?
7 years, 7 months ago
The city by the bay
A: edgeR - comparing treatment groups across multiple populations
7 years, 8 months ago
The city by the bay
A: RNAseq analysis: how to compare two very different samples?
7 years, 8 months ago
The city by the bay
A: scran: trendVar() / lm.fit() fails in single-cell RNAseq experiment
7 years, 9 months ago
The city by the bay
A: Packages employing RangedSummarizedExperiment objects
7 years, 9 months ago
The city by the bay
A: Representvie gene expression value in one condition with several replicates
7 years, 9 months ago
The city by the bay
A: Unbalanced experiment with multiple samples from each patient.
7 years, 9 months ago
The city by the bay
A: Limma PlotMDS: what values should be used?
7 years, 9 months ago
The city by the bay
A: Opinions on DESeqDataSetFromMatrix rowSums minimum for ChIP and/or ATAC-seq
7 years, 9 months ago
The city by the bay
A: block design to test two factors with limma
7 years, 9 months ago
The city by the bay
A: limma - contrast.fit returns coefficients without names
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