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Created An Answer That Has Been Accepted
Awarded 4988 times (see all awards). Earned by the
following contributors:
1 week, 1 day ago
United States
Answer: Limma comparing gene expression between base line and one treatment
1 week, 4 days ago
United States
Answer: findOverlaps(), queryHits and subjectHits()
1 month, 1 week ago
United States
Answer: DESeq2 returns results for group with just one replicate
1 month, 4 weeks ago
United States
Answer: LRT, pairwise comparisons and p-value adjustment
2 months, 3 weeks ago
United States
Answer: Help with error using camera() in limma
3 months ago
United States
Answer: Math expression in shapeCustom legend in EnhancedVolcano
3 months ago
United States
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
3 months ago
United States
Answer: How to retrieve gene ontology GO class from gene list?
3 months, 2 weeks ago
United States
Answer: Not fully paired differential gene expression analysis
4 months, 1 week ago
United States
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
4 months, 1 week ago
United States
Answer: padj-based gradient scale from barplot (clusterProfiler results) does not work p
4 months, 4 weeks ago
United States
Answer: Estimating Cell Counts for EPIC V2 array data
4 months, 4 weeks ago
United States
Answer: clusterProfiler, AnnotationHub, and discrepancies in GO Terms
5 months, 1 week ago
United States
Answer: RLE plots before and after RUVg correction are the same
5 months, 2 weeks ago
United States
Answer: ComplexHeatmap crashing R session
5 months, 3 weeks ago
United States
Answer: TMM normalization after RUVg correction
5 months, 3 weeks ago
United States
Answer: Need Help w/ Subset on GRangesList
5 months, 4 weeks ago
United States
Answer: Question about correction of confounders for EWAS
6 months, 1 week ago
United States
Answer: Merging of Human and Mouse SingleCellExperiment Objects Error
6 months, 1 week ago
United States
Answer: How to interpret log2fold values when using numeric contrasts in DESEQ2?
7 months, 2 weeks ago
United States
Answer: Txdb object for UCSC hs1 (T2T-CHM13)
7 months, 2 weeks ago
United States
Answer: Reduce single cell experiment size to use as reference for annotation with Singl
7 months, 2 weeks ago
United States
Answer: What is the meaning of "CpG interrogation" and "single nucleotide extension(SBE)
7 months, 4 weeks ago
United States
Answer: limma::voom vs edgeR::voomLmFit - when to use?
8 months, 1 week ago
United States
Answer: STRINGdb R package reference class instantiation with v12.0
8 months, 1 week ago
United States
Answer: Predicting missing values splines DESeq2
9 months, 1 week ago
United States
Answer: Need help generating BSgenome and orgdb
9 months, 1 week ago
United States
Answer: Subsetting Range Summarized Experiment
9 months, 2 weeks ago
United States
Answer: Annotation Dbi Error: unable to find an inherited method for function 'x' for si
9 months, 2 weeks ago
United States
Answer: SeqSQC R library, functions PCA and IBD not working
9 months, 3 weeks ago
United States
Answer: DiffBind returns different grey lists every time I run dba.blacklist even if I s
10 months ago
United States
Answer: Remove duplicates of colData in TreeSummarizedExperiment
1 year ago
United States
Answer: Questions Trying to Re-create MicroArray Data (GSE97562) (Fig. 2)
1 year ago
United States
Answer: Running DEseq2 without "factor" gives unexpected results
1 year ago
United States
Answer: Using oligo or xps to read and convert RNA-seq data CEL file to txt file.
1 year, 1 month ago
United States
Answer: P-value histogram of testLinearModel is not uniform
1 year, 3 months ago
United States
Answer: Using gcrma() and using the t-test to compare single genes of interest for disea
1 year, 3 months ago
United States
Answer: How to annotate genes from results of DiffBind
1 year, 4 months ago
United States
Answer: GOstats - subsetting termGraphs with terms from the html report and missing node
1 year, 4 months ago
United States
Answer: how to extract and match information of two filein R
1 year, 5 months ago
United States
Answer: TPP2D - multicore computing for bootstrapNullAlternativeModel(...)
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