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Created An Answer That Has Been Accepted
Awarded 5093 times (see all awards). Earned by the
following contributors:
3 months ago
United States
Answer: makeChipPackage(): Error in data.frame(..., check.names = FALSE) : arguments
5 months, 2 weeks ago
United States
Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm
5 months, 3 weeks ago
United States
Answer: AnnotationHub/ExperimentHub resources backup
5 months, 3 weeks ago
United States
Answer: DESeq2 Apeglm Coefficient Reordering / Log2FoldChange Comparison Change
7 months, 4 weeks ago
United States
Answer: Limma - Complex 2-way multi-level contrast with paired samples
8 months, 1 week ago
United States
Answer: Group-specific condition effects with individuals nested: matrix is not full ra
9 months ago
United States
Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =
9 months, 3 weeks ago
United States
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
11 months, 2 weeks ago
United States
Answer: bioconductor packages on bioconda
11 months, 2 weeks ago
United States
Answer: Struggle with the replicates of epic array data
11 months, 3 weeks ago
United States
Answer: preprocessIllumina error with EPICv2 array
1 year ago
United States
Answer: biomaRt rnorvegicus_gene_ensembl not available anymore
1 year ago
United States
Answer: clusterProfiler enrichGO on only T-cell related GO terms
1 year ago
United States
Answer: How to reverse complement some elements of a DNAStringSet
1 year ago
United States
Answer: Are transformed values from rlog /vst log2 normalized counts?
1 year ago
United States
Answer: How to conduct maSigPro analysis with only one condition?
1 year, 1 month ago
United States
Answer: ISO a solution to rank-order introns by transcript
1 year, 1 month ago
United States
Answer: Issues with retrieving Zea mays genes dataset: biomaRt error: looks like we're c
1 year, 1 month ago
United States
Answer: Batch adjustment for cohort based RNA seq data
1 year, 2 months ago
United States
Answer: Should tSNE from biol. replicates look alike?
1 year, 2 months ago
United States
Answer: What is the importance of `--countReadPairs` in featureCounts on paired end data
1 year, 2 months ago
United States
Answer: the count matrix have decimal values
1 year, 2 months ago
United States
Answer: How to Query Only SNPs from the biomaRt Variation Database
1 year, 3 months ago
United States
Answer: DESeq2: How to Compare the Condition Effects of Two Different Treatments?
1 year, 3 months ago
United States
Answer: Limma comparing gene expression between base line and one treatment
1 year, 3 months ago
United States
Answer: Limma - 0 downreg and upreg values
1 year, 3 months ago
United States
Answer: findOverlaps(), queryHits and subjectHits()
1 year, 4 months ago
United States
Answer: Mapping Between GenBank ID's and Uniprot
1 year, 4 months ago
United States
Answer: Test of Multiple Linear Combination on coefficients from Wald Test in Deseq2
1 year, 4 months ago
United States
Answer: DESeq2 returns results for group with just one replicate
1 year, 5 months ago
United States
Answer: LRT, pairwise comparisons and p-value adjustment
1 year, 6 months ago
United States
Answer: Help with error using camera() in limma
1 year, 6 months ago
United States
Answer: Math expression in shapeCustom legend in EnhancedVolcano
1 year, 6 months ago
United States
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
1 year, 6 months ago
United States
Answer: How to retrieve gene ontology GO class from gene list?
1 year, 7 months ago
United States
Answer: Not fully paired differential gene expression analysis
1 year, 7 months ago
United States
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
1 year, 7 months ago
United States
Answer: padj-based gradient scale from barplot (clusterProfiler results) does not work p
1 year, 7 months ago
United States
Answer: Is random access by row index possible for an indexed VCF file?
1 year, 8 months ago
United States
Answer: Estimating Cell Counts for EPIC V2 array data
1 year, 8 months ago
United States
Answer: clusterProfiler, AnnotationHub, and discrepancies in GO Terms
1 year, 8 months ago
United States
Answer: RLE plots before and after RUVg correction are the same
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