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Created An Answer With At Least 3 Up-Votes
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following contributors:
9 years, 8 months ago
The city by the bay
A: Clustering with differentially expressed genes in RNAseq
9 years, 9 months ago
The city by the bay
Using edgeR or DESeq2 to analyze allele-specific expression?
9 years, 9 months ago
The city by the bay
Using edgeR or DESeq2 to analyze allele-specific expression?
9 years, 9 months ago
The city by the bay
Using edgeR or DESeq2 to analyze allele-specific expression?
9 years, 9 months ago
The city by the bay
A: Does limma calculate pvalues using log2 fold changes or with linear values?
9 years, 9 months ago
The city by the bay
Using edgeR or DESeq2 to analyze allele-specific expression?
9 years, 9 months ago
The city by the bay
Using edgeR or DESeq2 to analyze allele-specific expression?
9 years, 10 months ago
The city by the bay
A: Interpretation of confidence interval values for logFC returned from topTable fu
9 years, 10 months ago
The city by the bay
Using edgeR or DESeq2 to analyze allele-specific expression?
9 years, 10 months ago
The city by the bay
Using edgeR or DESeq2 to analyze allele-specific expression?
9 years, 10 months ago
The city by the bay
edgeR - how to convert DGELRT and other classes to .csv files
9 years, 10 months ago
The city by the bay
A: finding DEG in a dataset with big sample size
9 years, 10 months ago
The city by the bay
A: edgeR - how to convert DGELRT and other classes to .csv files
9 years, 10 months ago
The city by the bay
Using edgeR or DESeq2 to analyze allele-specific expression?
9 years, 10 months ago
The city by the bay
Using edgeR or DESeq2 to analyze allele-specific expression?
9 years, 10 months ago
The city by the bay
Using edgeR or DESeq2 to analyze allele-specific expression?
9 years, 10 months ago
The city by the bay
A: Differential expression analysis: Permutation Test
9 years, 11 months ago
The city by the bay
A: What is logFC and "B" in methylation analysis ??
9 years, 12 months ago
The city by the bay
A: Scaling before normalisation in RNASeq
9 years, 12 months ago
The city by the bay
Csaw : filter windows based on matched negative control
9 years, 12 months ago
The city by the bay
A: deseq2, edger different number of replicates and extraction kit
9 years, 12 months ago
The city by the bay
Csaw : filter windows based on matched negative control
10 years ago
The city by the bay
A: Is the following a correct usage of Limma's removeBatchEffect() for clustered he
10 years ago
The city by the bay
Csaw : filter windows based on matched negative control
10 years ago
The city by the bay
A: edgeR no residual degrees of freedom for a specific row of numbers in dispCoxRei
10 years ago
The city by the bay
Csaw : filter windows based on matched negative control
10 years ago
The city by the bay
A: Design matrix for continuous independent variable in limma
10 years ago
The city by the bay
Csaw : filter windows based on matched negative control
10 years ago
The city by the bay
A: limma - complex design with paired samples, sex and batch effect
10 years ago
The city by the bay
Csaw : filter windows based on matched negative control
10 years ago
The city by the bay
Csaw : filter windows based on matched negative control
10 years ago
The city by the bay
A: EdgeR cpm: factor of 2 when adjusting library size?
10 years ago
The city by the bay
Csaw : filter windows based on matched negative control
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