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Question: memory limit problem
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gravatar for Kristina Hanspers
14.7 years ago by
Kristina Hanspers40 wrote:
Hi, I get an error saying " Cannot allocate vector of size 71289kb". Someone told me to increase the memory limit for R by typing " memory.limit(3000000000), but this doesn't work. Is there any way around this? I apparociate your answer. Thanks, Kristina
ADD COMMENTlink modified 14.7 years ago by Huntsinger, Reid20 • written 14.7 years ago by Kristina Hanspers40
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gravatar for Wolfgang Huber
14.7 years ago by
EMBL European Molecular Biology Laboratory
Wolfgang Huber13k wrote:
Hi Kristina Which system are you using? Please be more specific. On Unix, your system administrator may have set memory limits for you. Type ulimit at the unix prompt. Regards Wolfgang On Wed, 12 Mar 2003, Kristina Hanspers wrote: > Hi, > > I get an error saying " Cannot allocate vector of size 71289kb". Someone > told me to increase the memory limit for R by typing " > memory.limit(3000000000), but this doesn't work. Is there any way around > this? I apparociate your answer. Thanks, > > Kristina > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor > -- ---------------------------------------- Wolfgang Huber Division of Molecular Genome Analysis German Cancer Research Center Heidelberg, Germany ----------------------------------------
ADD COMMENTlink written 14.7 years ago by Wolfgang Huber13k
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gravatar for Huntsinger, Reid
14.7 years ago by
Huntsinger, Reid20 wrote:
You may want/need to "clean up" before you try to allocate a 70MB chunk. Try "gc()". Reid Huntsinger -----Original Message----- From: Kristina Hanspers [mailto:khanspers@gladstone.ucsf.edu] Sent: Wednesday, March 12, 2003 2:52 PM To: bioconductor@stat.math.ethz.ch Subject: [BioC] memory limit problem Hi, I get an error saying " Cannot allocate vector of size 71289kb". Someone told me to increase the memory limit for R by typing " memory.limit(3000000000), but this doesn't work. Is there any way around this? I apparociate your answer. Thanks, Kristina _______________________________________________ Bioconductor mailing list Bioconductor@stat.math.ethz.ch https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor ---------------------------------------------------------------------- --------
ADD COMMENTlink written 14.7 years ago by Huntsinger, Reid20
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