Entering edit mode
In the past, (DESeq2 versions < 1.1.4), MA plots from DESeq2 looked like the following (formatting modified by me, but you get the idea).
MA plots since 1.14 look different. Is there any reason to be alarmed at how the distribution of l2fc's is dramatically different in its randomness at low count thresholds?
Thanks Michael,
I didn't catch that. Sorry for wasting your time. I will look there first next time.
No problem. It’s still a new function. We’re developing new features based on this, to be released in October.