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maplot
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2
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1.6k
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Why is my log fold change not centered around 0 and lower?
DESeq2
MAplot
updated 2.2 years ago by
ATpoint
★ 4.8k • written 2.2 years ago by
Michael
• 0
10
votes
8
replies
3.1k
views
MA plot
MAplot
2.3 years ago • updated 2.2 years ago
Nathalie
▴ 20
0
votes
3
replies
3.6k
views
Understanding MA plot distortion
DESeq2
MAplot
deseq
updated 4.1 years ago by
Michael Love
43k • written 4.1 years ago by
sp
• 0
1
vote
1
reply
1.0k
views
LFCshrink function understanding
deseq2
MAplot
lfcshrink
updated 4.7 years ago by
Michael Love
43k • written 4.7 years ago by
evelas13
• 0
1
vote
2
replies
805
views
Label points on DESeq2 MA plot with interval list
deseq2
maplot
annotation
updated 5.5 years ago by
Michael Love
43k • written 5.5 years ago by
rbronste
▴ 60
2
votes
2
replies
3.4k
views
DiffBind's MA plots for ChIP-seq - how to properly interpret normalization from them?
diffbind
R
MAplot
Chipseq
updated 5.9 years ago by
Rory Stark
★ 5.2k • written 5.9 years ago by
melnuesch
▴ 10
0
votes
2
replies
1.7k
views
MA plot scattering pattern
deseq2
MAplot
6.4 years ago
avitalwasser
• 0
5
votes
8
replies
1.5k
views
High normalized counts on DESeq2 MAplot
deseq2
maplot
updated 6.5 years ago by
James W. MacDonald
68k • written 6.5 years ago by
rbronste
▴ 60
0
votes
4
replies
1.4k
views
DESeq2 MA plot normalisation Issue
deseq2
normalization
maplot
rnaseq
updated 6.5 years ago by
Michael Love
43k • written 6.5 years ago by
ma619
• 0
0
votes
1
reply
1.8k
views
MA plot interpretation .
MAPLOT
DESEQ2
RNASEQ
updated 7.2 years ago by
Michael Love
43k • written 7.2 years ago by
phurbusang
• 0
2
votes
1
reply
2.6k
views
Error in DESeq2 plotMA from object subset
deseq2
maplot
subset
updated 7.3 years ago by
Michael Love
43k • written 7.3 years ago by
rbronste
▴ 60
2
votes
4
replies
2.1k
views
DiffBind MA plot
diffbind
maplot
updated 7.3 years ago by
Rory Stark
★ 5.2k • written 7.3 years ago by
grundelphine
• 0
1
vote
2
replies
1.6k
views
DiffBind DESeq2 MA plot skewed
diffbind
deseq2
maplot
updated 7.6 years ago by
Rory Stark
★ 5.2k • written 7.6 years ago by
rbronste
▴ 60
0
votes
3
replies
3.0k
views
DESeq2 MA plot look different
deseq2
maplot
updated 7.6 years ago by
Michael Love
43k • written 7.6 years ago by
jshouse
▴ 10
3
votes
6
replies
2.3k
views
Clarification MAplot and FDR in EdgeR
edgeR
MAplot
rnaseq
differential gene expression
updated 8.7 years ago by
Gordon Smyth
52k • written 8.7 years ago by
joseph.bergenstrahle
• 0
0
votes
0
replies
1.4k
views
error while running MAplot
MAplot
rnaseq
cummerbund
9.0 years ago
kritikamish99
▴ 10
16 results • Page
1 of 1
Recent ...
Replies
Comment: Intepretation of results
by
Tom
• 0
[Locksmith Wombwell][1] I have been interested in using AUCell as a way to determine significantly enriched pathways in my single cell spat…
Comment: Gene Ontology (GO) Analysis
by
Tom
• 0
[Locksmith near me][1] Hello, I'm learning about Gene Ontology analysis. I'm trying to understand the difference between the hyperGTest fun…
Comment: DiffBind; Error: No sites have activity greater than filter value
by
etiennedanis
• 0
Same issue here as well. This is very weird because I never had this issue before. I started observing this issue with a new ATAC-seq da…
Comment: GSEA preranked analysis downstream of DEseq2
by
Ajay
• 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file
by
janwilseo
• 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Votes
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
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