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maplot
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2
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2.0k
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Why is my log fold change not centered around 0 and lower?
DESeq2
MAplot
updated 3.0 years ago by
ATpoint
★ 5.0k • written 3.0 years ago by
Michael
• 0
10
votes
8
replies
3.8k
views
MA plot
MAplot
3.0 years ago
Nathalie
▴ 20
0
votes
3
replies
4.0k
views
Understanding MA plot distortion
DESeq2
MAplot
deseq
updated 4.9 years ago by
Michael Love
43k • written 4.9 years ago by
sp
• 0
1
vote
1
reply
1.2k
views
LFCshrink function understanding
deseq2
MAplot
lfcshrink
updated 5.4 years ago by
Michael Love
43k • written 5.4 years ago by
evelas13
• 0
1
vote
2
replies
970
views
Label points on DESeq2 MA plot with interval list
deseq2
maplot
annotation
updated 6.2 years ago by
Michael Love
43k • written 6.2 years ago by
rbronste
▴ 60
2
votes
2
replies
3.9k
views
DiffBind's MA plots for ChIP-seq - how to properly interpret normalization from them?
diffbind
R
MAplot
Chipseq
updated 6.7 years ago by
Rory Stark
★ 5.3k • written 6.7 years ago by
melnuesch
▴ 10
0
votes
2
replies
1.9k
views
MA plot scattering pattern
deseq2
MAplot
7.2 years ago
avitalwasser
• 0
5
votes
8
replies
1.8k
views
High normalized counts on DESeq2 MAplot
deseq2
maplot
updated 7.2 years ago by
James W. MacDonald
68k • written 7.2 years ago by
rbronste
▴ 60
0
votes
4
replies
1.6k
views
DESeq2 MA plot normalisation Issue
deseq2
normalization
maplot
rnaseq
updated 7.3 years ago by
Michael Love
43k • written 7.3 years ago by
ma619
• 0
0
votes
1
reply
2.0k
views
MA plot interpretation .
MAPLOT
DESEQ2
RNASEQ
updated 8.0 years ago by
Michael Love
43k • written 8.0 years ago by
phurbusang
• 0
2
votes
1
reply
2.8k
views
Error in DESeq2 plotMA from object subset
deseq2
maplot
subset
updated 8.1 years ago by
Michael Love
43k • written 8.1 years ago by
rbronste
▴ 60
2
votes
4
replies
2.4k
views
DiffBind MA plot
diffbind
maplot
updated 8.1 years ago by
Rory Stark
★ 5.3k • written 8.1 years ago by
grundelphine
• 0
1
vote
2
replies
1.8k
views
DiffBind DESeq2 MA plot skewed
diffbind
deseq2
maplot
updated 8.4 years ago by
Rory Stark
★ 5.3k • written 8.4 years ago by
rbronste
▴ 60
0
votes
3
replies
3.2k
views
DESeq2 MA plot look different
deseq2
maplot
updated 8.4 years ago by
Michael Love
43k • written 8.4 years ago by
jshouse
▴ 10
3
votes
6
replies
2.7k
views
Clarification MAplot and FDR in EdgeR
edgeR
MAplot
rnaseq
differential gene expression
updated 9.5 years ago by
Gordon Smyth
53k • written 9.5 years ago by
joseph.bergenstrahle
• 0
0
votes
0
replies
1.6k
views
error while running MAplot
MAplot
rnaseq
cummerbund
9.8 years ago
kritikamish99
▴ 10
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Comment: Bulk RNAseq analysis for
by
Mariami
• 0
Thank you so much for your help! will try to proceed with the suggestion
Comment: GSEA in R/Bioconductor course
by
a2a2haa
• 0
Academic researchers often share their breakthroughs and course updates through visual stories, making it essential to have tools that pres…
Comment: Bulk RNAseq analysis for
by
Mariami
• 0
Thank you for the explanation. I understand, although at the moment we are limited in our ability to increase N. My concern came from the o…
Answer: Bulk RNAseq analysis for
by
Gordon Smyth
53k
All three packages allow paired comparisons, where the clone is the "pair". limma moreover allows mixed models (just run `voomLmFit` with `…
Comment: Announcing a New Journal - Bioinformatics Methods and Applications - Now Open fo
by
a2a2haa
• 0
By promoting reproducible analysis, the scientific community can better understand the precise mechanisms that make [Hydrogen inhalation sa…
Votes
Comment: Are transformed values from rlog /vst log2 normalized counts?
Are transformed values from rlog /vst log2 normalized counts?
Answer: Bulk RNAseq analysis for
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
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