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Question: ProStaR Not working, gives error in code?
0
gravatar for van.theodorakis
5 weeks ago by
van.theodorakis0 wrote:
Have I done anything wrong, or something in the original code is broken?

source("http://www.bioconductor.org/biocLite.R")
biocLite("DAPAR")
biocLite("Prostar")
library(DAPAR)
library(Prostar)
Prostar()

Listening on http://127.0.0.1:6064
Warning: Error in $: $ operator is invalid for atomic vectors

 

R version 3.4.0 (2017-04-21)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows >= 8 x64 (build 9200)

Matrix products: default

locale:
[1] LC_COLLATE=English_United States.1252 
[2] LC_CTYPE=English_United States.1252   
[3] LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C                          
[5] LC_TIME=English_United States.1252    

attached base packages:
[1] stats4    parallel  stats     graphics  grDevices
[6] utils     datasets  methods   base     

other attached packages:
 [1] imp4p_0.4           imputeLCMD_2.0     
 [3] impute_1.50.1       pcaMethods_1.68.0  
 [5] norm_1.0-9.5        tmvtnorm_1.4-10    
 [7] gmm_1.6-1           sandwich_2.4-0     
 [9] Matrix_1.2-11       mvtnorm_1.0-6      
[11] truncnorm_1.0-7     Iso_0.0-17         
[13] sm_2.2-5.4          openxlsx_4.0.17    
[15] MSnbase_2.2.0       ProtGenerics_1.8.0 
[17] BiocParallel_1.10.1 mzR_2.10.0         
[19] Rcpp_0.12.13        Biobase_2.36.2     
[21] BiocGenerics_0.22.1 DT_0.2             
[23] reshape2_1.4.2      highcharter_0.5.0  
[25] shinyAce_0.2.1      shinyjs_0.9.1      
[27] data.table_1.10.4-2 rhandsontable_0.3.4
[29] DAPARdata_1.4.0     shiny_1.0.5        
[31] Prostar_1.8.5       DAPAR_1.8.7 
ADD COMMENTlink modified 17 days ago by samuel.wieczorek0 • written 5 weeks ago by van.theodorakis0
0
gravatar for samuel.wieczorek
17 days ago by
France
samuel.wieczorek0 wrote:

Hi

this error was due to some updates in dependancy packages. The new version of DAPAR and Prostar (in Bioconductor 3.6) should work now.

 

Please let me know if all if ok

 

Sam

ADD COMMENTlink written 17 days ago by samuel.wieczorek0
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