Kind of a basic question, but I am trying to install the following TF footprinting package and running into a problem:
R does not allow installation of bagfoot_0.9.6.tar.gz because it has two dependencies that I do not wish to install:
install.packages("~/Downloads/bagfoot_0.9.6.tar.gz", repos = NULL, type = "source") ERROR: dependencies ‘BSgenome.Hsapiens.UCSC.hg19’, ‘BSgenome.Mmusculus.UCSC.mm9’ are not available for package ‘bagfoot’ * removing ‘/Library/Frameworks/R.framework/Versions/3.4/Resources/library/bagfoot’
Instead I installed ‘BSgenome.Mmusculus.UCSC.mm10’
Otherwise I installed all of the dependencies requires and indicated in the README file.
How can I go about changing the dependency related to the assembly I want to work with? Thanks.