Showing : package installation • reset
14
votes
21
replies
12k
views
Installing ShortRead - error: zlib not found even with zlib in LD_LIBRARY_PATH
package installation shortread dependency
updated 6.0 years ago by ▴ 240 • written 7.0 years ago by ▴ 60
0
votes
1
reply
1.2k
views
Biseq installation error
biseq package installation r
updated 6.4 years ago by 25k • written 6.4 years ago by • 0
0
votes
2
replies
1.9k
views
Rgraphviz installation from source on Linux (Fedora 28) w BioC 3.8 -- failure
package installation compilation error r package problem shared libraries loading error
6.5 years ago Martin Maechler ▴ 330
0
votes
2
replies
1.4k
views
Rsubread installation failed
r package installation
6.5 years ago justinkablan225 ▴ 10
1
vote
1
reply
3.5k
views
Installation of RCurl
package installation
updated 6.6 years ago by 25k • written 6.6 years ago by ▴ 110
1
vote
4
replies
2.0k
views
Error installing EWCE package
package installation EWCE not available (for r version 3.5.0)
updated 6.6 years ago by ★ 6.6k • written 6.6 years ago by • 0
0
votes
2
replies
11k
views
Is there a way to specify where BiocInstaller will install packages similar to the "lib=...." for install.packages?
biocinstaller custom library path installation package installation
updated 6.7 years ago by 68k • written 6.7 years ago by ▴ 20
1
vote
6
replies
1.7k
views
Cannot install flowViz package because dependency flowCore cannot be found, however flowCore has just been installed.
flowViz flowCore package installation
updated 6.7 years ago by 25k • written 6.7 years ago by ▴ 10
5
votes
5
replies
2.7k
views
Is BiocInstaller::biocLite incompatible with withr::with_makevars?
biocLite package installation withr biocinstaller rhtslib
updated 6.7 years ago by 25k • written 6.7 years ago by ▴ 150
0
votes
3
replies
3.0k
views
Support for devtools::install_version
package installation
6.8 years ago acekane1 • 0
0
votes
1
reply
2.2k
views
R says include dir is empty, but it's not.
R bioconductor biocinstaller package installation
updated 6.8 years ago by 25k • written 6.8 years ago by ▴ 20
0
votes
1
reply
1.8k
views
Install Bioconductor package locally/temporarily
R rstudio package installation
updated 6.8 years ago by 25k • written 6.8 years ago by ▴ 20
0
votes
1
reply
1.1k
views
Minci fails to install on Linux CentOS
R minfi package installation
6.8 years ago barbaraheude • 0
0
votes
4
replies
2.7k
views
ChIPQC error: "non-zero exit status"
software error package installation chipqc txdb.hsapiens.ucsc.hg18.knowngene
updated 6.8 years ago by 25k • written 6.8 years ago by • 0
0
votes
1
reply
3.1k
views
TxDb.Hsapiens.UCSC.hg19.knownGen installation fail - non-zero exit status
software error package installation genomicfeatures
updated 6.9 years ago by 25k • written 6.9 years ago by • 0
0
votes
6
replies
2.1k
views
Illumina Methylation Manifest Install
Install biocinstaller package installation
7.1 years ago julieumn • 0
2
votes
5
replies
1.2k
views
trouble in install DESeq2
deseq2 package installation
7.1 years ago yueli7 ▴ 20
0
votes
1
reply
901
views
problem installing bioconductor
bioconductor package installation
7.1 years ago kdarky2015 • 0
3
votes
2
replies
2.8k
views
Trouble installing bioconductor packages: ERROR: sub-architecture 'R' is not installed
package installation mac os x
updated 7.1 years ago by 25k • written 7.1 years ago by • 0
0
votes
1
reply
1.3k
views
Prostar and DAPAR installation
install error package installation DAPAR prostar R version 3.4.4
7.1 years ago rita.reig • 0
0
votes
1
reply
1.3k
views
installation of Biocunductor packages in My home directory.
biocinstaller package installation installr
7.1 years ago vinod.acear ▴ 50
0
votes
1
reply
2.0k
views
Issue installing packages ATACseqQC and GO.db
GO.db biocinstaller package installation atacseqqc
updated 7.2 years ago by ★ 1.3k • written 7.2 years ago by • 0
2
votes
3
replies
3.1k
views
hgu133plus2hsentrezgcdf or hgu133ahsentrezgcdf packages not installing
readaffy frma affy package installation hgu133a
7.2 years ago Chris Mancuso • 0
0
votes
5
replies
27k
views
package DESeq2 installation with R.
deseq2 R package installation
updated 4.0 years ago by 43k • written 7.2 years ago by • 0
0
votes
1
reply
1.3k
views
mzR installation on Ubuntu 16.04
mzr package installation ubuntu
updated 7.2 years ago by 1.6k • written 7.2 years ago by • 0
0
votes
4
replies
3.1k
views
Windows 10 openCyto Install: installation path not writeable, unable to update packages: boot, Matrix, mgcv
bioclite openCyto package installation
updated 7.2 years ago by ★ 1.3k • written 7.7 years ago by ▴ 70
6
votes
2
replies
2.0k
views
Is there a way to tell biocLite() to install a Bioconductor package only if it is not installed already?
bioclite package installation installation install
updated 7.3 years ago by ★ 6.6k • written 7.3 years ago by ▴ 10
0
votes
2
replies
1.3k
views
Installing DEseq packeges under windows10 , can't find library after succesful install
deseq2 package installation
updated 7.3 years ago by 43k • written 7.3 years ago by • 0
0
votes
7
replies
1.7k
views
Installing RnBeads via bioconductor - .onLoad failed in loadNamespace(), call: NULL
package installation .onload
7.4 years ago nicogerstner • 0
0
votes
1
reply
1.7k
views
biocLite("lpsymphony") consistently fails with linker errors (can't find static libraries to link)
lpsymphony package installation bioclite
updated 7.4 years ago by ▴ 10 • written 7.5 years ago by • 0
0
votes
2
replies
6.6k
views
An Installing error that cannot open URL
software error package installation version
updated 7.4 years ago by 25k • written 7.4 years ago by • 0
3
votes
2
replies
2.5k
views
Installation of MSA package fails
MSA package installation software error compilation error
updated 7.5 years ago by ▴ 300 • written 7.5 years ago by ▴ 10
3
votes
2
replies
2.4k
views
Rsamtools use for R version 3.4.1
rsamtools package installation samtools
updated 7.5 years ago by 68k • written 7.5 years ago by ▴ 60
0
votes
1
reply
1.6k
views
Error installing flowDensity on latest docker container
R package installation docker
updated 7.5 years ago by 4.1k • written 7.5 years ago by • 0
2
votes
7
replies
3.9k
views
Bioconductor installing pakage error, R 3.4.2, Ubuntu 17.10
bioconductor biocinstaller package installation
7.5 years ago martyferr90 ▴ 20
0
votes
1
reply
1.2k
views
problem in installing IlluminaHumanMethylationEPICanno.ilm10b2.hg19
R software error package installation
updated 7.6 years ago by 68k • written 7.6 years ago by • 0
1
vote
1
reply
1.6k
views
Changing R package dependencies
package installation dependencies bagfootr bagfoot
updated 7.6 years ago by 21k • written 7.6 years ago by ▴ 60
1
vote
2
replies
2.1k
views
Installation problem, S4Vectors, something about "apply_hotfix73465" not found
package installation s4vectors
updated 7.6 years ago by 25k • written 7.6 years ago by • 0
0
votes
1
reply
2.2k
views
GO.db won't install for using goseq package
GO.db goseq package installation error
updated 7.7 years ago by 25k • written 7.7 years ago by • 0
0
votes
2
replies
1.9k
views
pd.hta.2.0 not installed with Bioconductor 3.5 BiocInstaller 1.26.0 R 3.4.1
package installation pd.hta.2.0
7.7 years ago alexander2073 • 0
1
vote
1
reply
1.1k
views
fail to install package commeRbund
package installation
updated 7.8 years ago by 25k • written 7.8 years ago by • 0
0
votes
2
replies
6.6k
views
Unable to install any bioconductor packages
R biocinstaller bioclite package installation
7.8 years ago sebastien200109 • 0
0
votes
1
reply
1.6k
views
Problems with packages that need libgfortran.so.3
software error bioconductor package installation
updated 7.8 years ago by 25k • written 7.8 years ago by • 0
1
vote
2
replies
1.3k
views
org.Rn,eg.db not yet available for R version 3.3.3
R package installation
updated 7.8 years ago by ★ 3.0k • written 7.8 years ago by ▴ 10
1
vote
12
replies
4.1k
views
Problem in installing bioconductor
package installation
7.9 years ago nosheenfaiz09 • 0
0
votes
3
replies
1.8k
views
Failed to install 'DOSE' package. Win10, 'single candle'
DOSE package installation windows10
7.9 years ago Yisong Zhen ▴ 200
1
vote
1
reply
4.4k
views
edgeR reinstall failure: edgeR.rdb' is corrupt
edgeR package installation
updated 7.9 years ago by ★ 28k • written 7.9 years ago by • 0
2
votes
3
replies
6.0k
views
Error during EBImage installation
ebimage ggtree package installation
updated 8.0 years ago by ▴ 750 • written 8.0 years ago by ▴ 10
3
votes
3
replies
4.0k
views
problem reinstalling Bioconductor package 'clusterProfiler' after updating R to 3.4.0
clusterprofiler package installation r update
updated 8.0 years ago by ▴ 10 • written 8.1 years ago by ▴ 10
7
votes
11
replies
16k
views
Error: package or namespace load failed for...
package installation flowviz flowcore rcpp flow cytometry
updated 8.0 years ago by 25k • written 8.0 years ago by ▴ 50
50 results • Page 1 of 1
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Comment: Heatmap of rnaseq data with z-score scale by giovanna • 0
thank you for your reply. I'm sorry if the question is off topic. the analysis and relative construction of the heatmap was done using bioc…
Answer: Heatmap of rnaseq data with z-score scale by James W. MacDonald 68k
Without including the row names for the heatmap, it's impossible to know if the directionality is switched or not. Do note that the orderin…
Comment: Heatmap of rnaseq data with z-score scale by giovanna • 0
![Figure1][1]![Figure2][2] [1]: /media/images/d62918c5-2886-44ae-930d-91d292c3 [2]: /media/images/421df232-8a9c-4016-bc4a-431ca57a
Comment: parameters of filterByExpr by caroline.zanchi ▴ 10
Ah yes sorry :) But then I still do not understand why is it that on the plot I attached, the gene definitely has non-0 counts in less than…
Answer: Typo in the help of lmFit() by Gordon Smyth 52k
Thanks for the heads-up. > The _Details_ in the documentation of lmFit() still says that the default correlation is 0.75 Yes, you're righ…
Votes
Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm
Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm
Deseq2 DE analysis of host-pathogen samples (model separately or jointly?)
Comment: Check removeBatchEffect effectiveness
Answer: Check removeBatchEffect effectiveness
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