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Question: issue with FEA - Gene-Term Linker in FGNet package
0
12 months ago by
Seymoo0
Oslo
Seymoo0 wrote:



serverWS = "http://gtlinker.cnb.csic.es:8182"

in fea_gtLinker() function is not responding. R throws error below



Error in function (type, msg, asError = TRUE)  :
Failed to connect to gtlinker.cnb.csic.es port 8182: Timed out

Anyone has similar problem?

modified 12 months ago by saibar20 • written 12 months ago by Seymoo0

Hello. I keep getting the same error message and for similar reasons (apparently) also cannot use DAVID for fea on FGNet. Does anyone have an answer for it? Is there any other mirror for GTLinker? I would like to replicate past analyses and would really appreciate advice on how to use FGNet when GTLinker is down. For DAVID I get the "illegal characters found in URL" and I have tried to find a solution but with no success. I am positive I just don't know how to provide the proper URL. Thank you.

1
12 months ago by
saibar20
University of Salamanca, Spain / VIB-KU Leuven, Belgium
saibar20 wrote:

Gene-Term Linker server is down. We have contacted the maintainer, and it will hopefully be working again within a few hours/days.

Sorry for the inconvenience.

Can this be done again? Thank you.

The server is now back online but I keep getting the error "Error in reply$analyzeResponse :$ operator is invalid for atomic vectors" which I reckon is related to retrieving the Job ID... Any advice, please?

1
12 months ago by
saibar20
University of Salamanca, Spain / VIB-KU Leuven, Belgium
saibar20 wrote: