Search
Question: issue with FEA - Gene-Term Linker in FGNet package
0
gravatar for Seymoo
13 months ago by
Seymoo0
Oslo
Seymoo0 wrote:

`

serverWS = "http://gtlinker.cnb.csic.es:8182"

` in fea_gtLinker() function is not responding. R throws error below

`

Error in function (type, msg, asError = TRUE)  : 
  Failed to connect to gtlinker.cnb.csic.es port 8182: Timed out

`

 

Anyone has similar problem?

ADD COMMENTlink modified 13 months ago by saibar20 • written 13 months ago by Seymoo0

Hello. I keep getting the same error message and for similar reasons (apparently) also cannot use DAVID for fea on FGNet. Does anyone have an answer for it? Is there any other mirror for GTLinker? I would like to replicate past analyses and would really appreciate advice on how to use FGNet when GTLinker is down. For DAVID I get the "illegal characters found in URL" and I have tried to find a solution but with no success. I am positive I just don't know how to provide the proper URL. Thank you.

ADD REPLYlink written 8 weeks ago by duonlumo0
1
gravatar for saibar
13 months ago by
saibar20
University of Salamanca, Spain / VIB-KU Leuven, Belgium
saibar20 wrote:

Gene-Term Linker server is down. We have contacted the maintainer, and it will hopefully be working again within a few hours/days.

Sorry for the inconvenience.

ADD COMMENTlink written 13 months ago by saibar20

Can this be done again? Thank you.

ADD REPLYlink written 8 weeks ago by duonlumo0

The server is now back online but I keep getting the error "Error in reply$analyzeResponse : $ operator is invalid for atomic vectors" which I reckon is related to retrieving the Job ID... Any advice, please?

ADD REPLYlink written 8 weeks ago by duonlumo0
1
gravatar for saibar
13 months ago by
saibar20
University of Salamanca, Spain / VIB-KU Leuven, Belgium
saibar20 wrote:

GeneTerm Linker (http://gtlinker.cnb.csic.es/) is now working again.

ADD COMMENTlink modified 13 months ago • written 13 months ago by saibar20
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 196 users visited in the last hour