The editor has been updated to markdown! Please see more info at: Tutorial: Updated Support Site Editor

Question: SVA/Combat without fitting an intercept
gravatar for elim
16 months ago by
elim0 wrote:


I'm trying to remove batch effects from a dataset with sva, but I'm having trouble fitting the contrasts I need because of the intercept. I could only find examples with an intercept, but the majority of my analysis are very hard to interpret with an intercept. Is it ok to use sva with a model without intercept? Does it make a difference which coefficient get set as an intercept in sva?


Thank you in advance.

limma sva combat batch effect • 269 views
ADD COMMENTlink modified 16 months ago • written 16 months ago by elim0
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 376 users visited in the last hour