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Question: gcpapc package fails at bindWidth step
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gravatar for dfinkels64
11 days ago by
dfinkels640
dfinkels640 wrote:

Hi,

I'm trying to test gcapc on my own bam file.  It works fine on the system file. 

The command and error are below, any suggestions are welcome:

> bindWidth(coverage, range = c(50L, 500L), step = 50L, odd = TRUE)
Starting to estimate bdwidth.
Error in bindWidth(coverage, range = c(50L, 500L), step = 50L, odd = TRUE) : 
  bdwidth: coverage is not a list of 2 elements

 

 

ADD COMMENTlink modified 11 days ago • written 11 days ago by dfinkels640

Sorry the  last was wrong HERE is the error I'm having:

 

bindWidth(cov, range = c(50L, 500L), step = 50L, odd = TRUE)
Starting to estimate bdwidth.
...... Cycle 1 for bind width estimation
Error in seq.default(range[1], range[2], step) : 
  'from' must be a finite number

ADD REPLYlink written 11 days ago by dfinkels640
0
gravatar for dfinkels64
11 days ago by
dfinkels640
dfinkels640 wrote:

Solved it: header needed to change: no NT sequences

ADD COMMENTlink written 11 days ago by dfinkels640
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