Wondering if there is a way to filter the following output:
resOrdered <- res[(res$padj < 0.01),]
write.csv(as.data.frame(resOrdered$padj < 0.01),file="test.csv")
so as to get as an output .csv only (something below a padj, with a fold-change cutoff, as well as a minimum baseMean) simultaneously without subsetting? Some internal function within DESeq2?