I am using Clariom D Assays arrays and have tried to annotate it using the following:
rma <- oligo::rma(data)
anno<- annotateEset(rma, pd.clariom.d.human)
write.table(anno, file = "anno.txt")
Unfortunately, I got not annotated txt file with samples as rows and TC* IDs as columns.
How can I get annotated file (with gene annotation and transcript genome position) and with samples as a column and IDs as a row.