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Hi,
from this morning this error appeared when I try to install some packages, like "ChIPpeakAnno" and "ensembldb".
my sessioninfo is:
sessionInfo() R Under development (unstable) (2017-11-26 r73782) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 16.04.3 LTS Matrix products: default BLAS: /usr/local/lib/R/lib/libRblas.so LAPACK: /usr/local/lib/R/lib/libRlapack.so locale: [1] LC_CTYPE=it_IT.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=it_IT.UTF-8 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=it_IT.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] BiocInstaller_1.29.2 devtools_1.13.4 loaded via a namespace (and not attached): [1] Rcpp_0.12.14 roxygen2_6.0.1 digest_0.6.13 [4] withr_2.1.0 commonmark_1.4 R6_2.2.2 [7] magrittr_1.5 stringi_1.1.6 xml2_1.1.1 [10] DEScan2_2.00.0 tools_3.5.0 stringr_1.2.0 [13] parallel_3.5.0 compiler_3.5.0 BiocGenerics_0.25.1 [16] memoise_1.1.0
Does anyone knows how to handle this problem?
Thanks!
Looking at NAMESPACEs of ensembldb and ensembldb, seems that they want to import this path function from Rsamtools package...
But Rsamtools seems to not export it anymore!
Thanks for reporting! I'll look into it.