Showing : chippeakanno • reset
0
votes
2
replies
144
views
annotate peaks using a custom genome
ChIPSeq annotate ChIPpeakAnno
updated 5 weeks ago by ▴ 60 • written 6 weeks ago by ▴ 140
8
votes
16
replies
631
views
How to apply ChIPpeakAnno to your Granger object to annotate the peaks?
ChIPpeakAnno
7 weeks ago • updated 6 weeks ago Chris • 0
1
vote
2
replies
225
views
How to map geneIds to ENTREZIDs
Xenopus_laevis ChIPpeakAnno
4 months ago stacy.genovese • 0
1
vote
1
reply
266
views
Interpretation of $vennCounts output "Others"
ChIPpeakAnno
updated 5 months ago by ★ 1.3k • written 5 months ago by ▴ 10
0
votes
2
replies
299
views
Empty matrix
ChIPpeakAnno Normalization EnrichedHeatmap HELP TxDb.Celegans.UCSC.ce11.refGene
7 months ago michela ▴ 20
0
votes
1
reply
238
views
Trying to understand the `select` option in `annotatePeakInBatch` function of `ChIPpeakAnno` package.
ChIPpeakAnno
updated 9 months ago by 63k • written 9 months ago by • 0
1
vote
1
reply
273
views
How can I do pathway analysis by ChipPeakAnno package?
ChIPpeakAnno
10 months ago mehdi • 0
0
votes
1
reply
349
views
AssignChromosomeRegion not working in Rstudio 4.2
ChIPpeakAnno ChIPSeq
updated 12 months ago by ★ 1.3k • written 12 months ago by • 0
0
votes
1
reply
434
views
peak annotation
ChIPpeakAnno Annotation
updated 13 months ago by ▴ 60 • written 14 months ago by ▴ 660
1
vote
2
replies
1.0k
views
another problem when converting bed to granges using togranges
ChIPpeakAnno
16 months ago Bakhtiyar • 0
0
votes
2
replies
487
views
ChIP-seq or CUT&RUN enrichment
ChIPQC ChIPpeakAnno
16 months ago Bogdan ▴ 660
2
votes
6
replies
1.3k
views
Problem converting a bed file to granges using togranges chippeakanno
ChIPpeakAnno
updated 16 months ago by ▴ 60 • written 16 months ago by • 0
0
votes
0
replies
442
views
findOverlapsOfPeaks - peaklist of connectedPeaks="min:
findOverlapsOfPeaks ChIPpeakAnno chipseq
18 months ago Nadav • 0
1
vote
2
replies
1.4k
views
ChIPpeakAnno findOverlapsOfPeaks error: "Error in FUN(X[[i]], ...) : Inputs contains duplicated ranges. please recheck your inputs."
HELP ChIPpeakAnno
19 months ago lexi.kellington • 0
0
votes
4
replies
1.5k
views
Error in .order_seqlevels(chrom_sizes[, "chrom"])
ChIPpeakAnno
19 months ago Tongjun • 0
1
vote
6
replies
982
views
Annotation by CHIPeakAnno tool
ChIPpeakAnno
23 months ago Arunima ▴ 10
1
vote
3
replies
625
views
genomicElementDistribution function not found
ChIPpeakAnno
updated 23 months ago by ★ 4.3k • written 23 months ago by ▴ 10
2
votes
2
replies
907
views
Hello how to use ChIPpeakAnno for latest version of ensemble genome aligned data
ChIPpeakAnno
2.2 years ago Lucky • 0
7
votes
9
replies
1.2k
views
counts of overlapping peaks using findOverlapOfPeaks from ChIPpeakAnno
chippeakanno
updated 2.8 years ago by ★ 4.3k • written 2.8 years ago by ▴ 140
2
votes
2
replies
496
views
how to suppress makeVennDiagram plot
ChIPpeakAnno
2.8 years ago C T ▴ 140
0
votes
2
replies
584
views
How to get 'shortest' distance with ChIPpeakAnno::binOverFeature
ChIPpeakAnno
3.8 years ago liruiradiant • 0
0
votes
1
reply
762
views
Unable to annotate in ChIPQC using yeast genome
ChIPQC GenomicRanges ChIPpeakAnno
updated 2.1 years ago by • 0 • written 4.1 years ago by • 0
0
votes
4
replies
833
views
chippeakanno file reading error
ChiPpeakAnno
4.2 years ago saddamhusain77 • 0
1
vote
6
replies
931
views
how does "maxgap" in ChIPpeakAnno working?
ChIPpeakAnno
4.3 years ago ngs06 ▴ 20
2
votes
10
replies
2.5k
views
ChIPpeakAnno, MACS format annotation
bioconductor ChIPpeakAnno
updated 4.4 years ago by ★ 4.3k • written 6.2 years ago by ▴ 30
0
votes
7
replies
1.0k
views
ChIPpeakAnno overlap peaks with TSS returns more than TSS overlap
chippeakanno chipseq R
updated 4.7 years ago by ★ 1.3k • written 4.7 years ago by • 0
3
votes
6
replies
1.1k
views
ChIP peak annotation: how to get all genes that overlap each peak?
ChIP-seq chippeakanno chipseeker
4.9 years ago 94133 • 0
0
votes
1
reply
823
views
Error creating pool for permutation test (PeakPermTest)
permutation pool chippeakanno
4.9 years ago ge2sasag • 0
1
vote
1
reply
694
views
Row clustering featureAlignedHeatmap function (ChipPeakAnno package)
heatmap chippeakanno
updated 5.1 years ago by ★ 1.3k • written 5.1 years ago by • 0
2
votes
2
replies
1.3k
views
Can't install ChIPpeakanno - "libmysqlclient was not found" - do I need to remove latest version of R?
ChIPpeakAnno
updated 5.3 years ago by ★ 6.0k • written 5.3 years ago by ▴ 20
0
votes
3
replies
986
views
integer overflow in ChIPpeakAnno assignChromosomeRegion
ChIPpeakAnno assignChromosomeRegion
updated 5.3 years ago by ★ 4.3k • written 5.3 years ago by ▴ 740
1
vote
1
reply
664
views
Custom regions in assignChromosomeRegion?
chippeakanno
updated 5.3 years ago by ★ 1.3k • written 5.3 years ago by • 0
1
vote
2
replies
1.8k
views
Error : object path is not exported by namespace:Rsamtools
packages installation problem rsamtools chippeakanno ensembldb
5.5 years ago inzirio ▴ 10
1
vote
4
replies
1.2k
views
ChIPpeakAnno binOverGene error
chippeakanno binOverGene
updated 5.5 years ago by ★ 1.3k • written 5.5 years ago by • 0
0
votes
1
reply
874
views
ChIPpeakAnno to find peaks nearest to miRNA
ChIPpeakAnno ChIPpeakAnno
updated 5.6 years ago by • 0 • written 10.5 years ago by ▴ 120
2
votes
3
replies
2.2k
views
org.Mm.eg.db mm9 version for ChIPpeakAnno getEnrichedGO function
chippeakanno annotationdbi
updated 5.6 years ago by • 0 • written 7.6 years ago by • 0
0
votes
1
reply
1.0k
views
featureAlignedSignal() error: deparse(sig): object 'sig' not found.
bioconductor chippeakanno featureAlignedDistribution featureAlignedSignal
updated 5.6 years ago by • 0 • written 6.7 years ago by • 0
0
votes
1
reply
730
views
Help for ChIP script !! Error message while installing packages
annotation chippeakanno
updated 5.7 years ago by 25k • written 5.7 years ago by • 0
5
votes
4
replies
3.7k
views
What are out-of-bound ranges? Is it necessary to get rid of them?
r ChIPpeakAnno
6.2 years ago • updated 5.9 years ago salamandra ▴ 20
4
votes
3
replies
970
views
Annotation Database for ChIPpeakAnno
ChIPpeakAnno
updated 6.0 years ago by ★ 1.3k • written 6.0 years ago by ▴ 110
1
vote
1
reply
821
views
Regarding ChIPpeakAnno installation error
chippeakanno
updated 6.1 years ago by 25k • written 6.1 years ago by ▴ 10
0
votes
3
replies
1.8k
views
ChIPpeakAnno :findOverlapsOfPeaks: number for overlap peak in venn diagram is different than output of ol1$overlappingPeaks
chippeakanno
updated 6.2 years ago by ★ 1.3k • written 6.2 years ago by • 0
22
votes
10
replies
6.9k
views
Error in GRanges: could not find symbol "recursive" in environment of the generic function
granges chippeakanno
updated 6.2 years ago by ▴ 10 • written 6.2 years ago by ▴ 80
2
votes
3
replies
1.2k
views
ChIPpeakAnno-annotation of peaklist with gene names, creating heat maps
chippeakanno overlappingpeaks annotation
updated 6.5 years ago by ★ 1.3k • written 6.5 years ago by • 0
2
votes
7
replies
2.5k
views
ChIPpeakAnno-problem exporting data due to "arguments imply differing number of rows"
chippeakanno
updated 6.5 years ago by ★ 4.3k • written 6.5 years ago by • 0
3
votes
5
replies
2.7k
views
Error with ChIPpeakAnno Ensembl annotation
ChIPpeakAnno genomicfeatures
updated 6.6 years ago by ★ 4.3k • written 6.6 years ago by ▴ 360
0
votes
1
reply
708
views
Discordant results in finding overlaps for three peak data with ChIPpeakAnno
ChIPpeakAnno
6.8 years ago moyitasha • 0
5
votes
15
replies
2.6k
views
nearest genes using TxDb.Hsapiens.UCSC.hg19
txdb.hsapiens.ucsc.hg19.knowngene ChIPpeakAnno
updated 7.0 years ago by ★ 4.3k • written 7.0 years ago by ▴ 140
0
votes
1
reply
919
views
Error with findOverlapsOfPeaks
ChIPpeakAnno
7.1 years ago alex.tamburino • 0
0
votes
3
replies
1.2k
views
CHiPpeakAnno GO and/or KEGG results presenting
chippeakanno go kegg graphics
7.1 years ago lokapal • 0
50 results • Page 1 of 1
Recent ...
Replies
Comment: Ensembl plants at annotationHub? by Bruno • 0
Hi Guido, Thanks for your fast reply the error was as said in my question "Annotation must be a GRanges object", when I tried to use the a…
Comment: Ensembl plants at annotationHub? by Guido Hooiveld ★ 3.6k
You did not show the code that resulted in that error, so we have to guess what you did. Yet, the [R package][1] `Signac` contains the func…
Comment: Query regarding phyloseq object construct with QIIME output by betterwound • 0
Thanks for sharing the code [geometry dash](https://geometrydash.io/)
Answer: Ensembl plants at annotationHub? by Bruno • 0
Hi Johannes, First, thank you so much for providing these annotations for the community. We feel often a bit left off in the plant commu…
Comment: DESeq2 on multilevel design variable by swbarnes2 ★ 1.2k
Did you relevel before or after calling DESeq?
Votes
Comment: Ensembl plants at annotationHub?
Answer: DESeq2 on multilevel design variable
Comment: Sudden error with KEGG analysis using gometh
Comment: Sudden error with KEGG analysis using gometh
Answer: Although I successfully installed the package "simpleaffy'' , I cannot library i
Awards • All
Popular Question to Johannes Rainer ★ 2.0k
Popular Question to Jenn ▴ 30
Voter to swbarnes2 ★ 1.2k
Teacher to James W. MacDonald 63k
Popular Question to kyliecode • 0
Locations • All
France, 9 minutes ago
Hong Kong, 18 minutes ago
WEHI, Melbourne, Australia, 32 minutes ago
Netherlands, 37 minutes ago
Germany, 42 minutes ago
Traffic: 476 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6