Question: Error : object path is not exported by namespace:Rsamtools
0
gravatar for inzirio
22 months ago by
inzirio10
inzirio10 wrote:

Hi,

from this morning this error appeared when I try to install some packages, like "ChIPpeakAnno" and "ensembldb".

my sessioninfo is:

sessionInfo()
R Under development (unstable) (2017-11-26 r73782)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 16.04.3 LTS

Matrix products: default
BLAS: /usr/local/lib/R/lib/libRblas.so
LAPACK: /usr/local/lib/R/lib/libRlapack.so

locale:
 [1] LC_CTYPE=it_IT.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=it_IT.UTF-8    
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=it_IT.UTF-8   
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] BiocInstaller_1.29.2 devtools_1.13.4     

loaded via a namespace (and not attached):
 [1] Rcpp_0.12.14        roxygen2_6.0.1      digest_0.6.13      
 [4] withr_2.1.0         commonmark_1.4      R6_2.2.2           
 [7] magrittr_1.5        stringi_1.1.6       xml2_1.1.1         
[10] DEScan2_2.00.0      tools_3.5.0         stringr_1.2.0      
[13] parallel_3.5.0      compiler_3.5.0      BiocGenerics_0.25.1
[16] memoise_1.1.0      

 

Does anyone knows how to handle this problem?

Thanks!

ADD COMMENTlink modified 22 months ago • written 22 months ago by inzirio10
1

Looking at NAMESPACEs of ensembldb and ensembldb, seems that they want to import this path function from Rsamtools package...

But Rsamtools seems to not export it anymore!
 

ADD REPLYlink written 22 months ago by inzirio10

Thanks for reporting! I'll look into it.

ADD REPLYlink written 22 months ago by Johannes Rainer1.5k
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