Question: GSEA-class file (.cls) parsing error message
0
gravatar for snguyen268
21 months ago by
snguyen2680
snguyen2680 wrote:

Hi all,

I am creating a .cls file for my GSEA analysis and see the below error. Can anyone suggest a solution?

I create the file using TeXworks. The file looks like this:

37 2 1

#CD69neg CD69pos

CD69neg CD69pos CD69pos CD69pos CD69neg CD69pos CD69pos CD69pos CD69pos CD69neg CD69neg CD69neg CD69neg CD69pos CD69pos CD69neg CD69pos CD69pos CD69neg CD69neg CD69neg CD69pos CD69pos CD69pos CD69neg CD69pos CD69pos CD69neg CD69neg CD69pos CD69pos CD69pos CD69neg CD69pos CD69pos CD69pos CD69pos

<error details="">

---- Full Error Message ---- There were errors: ERROR(S) #:1 Parsing trouble edu.mit.broad.genome.parsers.Par ...

---- Stack Trace ----

of exceptions: 1

------Number of items found in cls data 10 is not equal to the number specified on the header line 37------ edu.mit.broad.genome.parsers.ParserException: Number of items found in cls data 10 is not equal to the number specified on the header line 37 at edu.mit.broad.genome.parsers.ClsParser.doSanityChecks(ClsParser.java:388) at edu.mit.broad.genome.parsers.ClsParser._parse_genecluster_style_categorical(ClsParser.java:252) at edu.mit.broad.genome.parsers.ClsParser.parse(ClsParser.java:226) at edu.mit.broad.genome.parsers.ParserFactory._readTemplates(ParserFactory.java:342) at edu.mit.broad.genome.parsers.ParserFactory.readTemplate(ParserFactory.java:293) at edu.mit.broad.genome.parsers.ParserFactory.read(ParserFactory.java:753) at edu.mit.broad.genome.parsers.ParserFactory.read(ParserFactory.java:726) at edu.mit.broad.genome.parsers.ParserWorker.doInBackground(ParserWorker.java:52) at javax.swing.SwingWorker$1.call(SwingWorker.java:295) at java.util.concurrent.FutureTask.run(FutureTask.java:266) at javax.swing.SwingWorker.run(SwingWorker.java:334) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) at java.lang.Thread.run(Thread.java:748)

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