Entering edit mode
The current version (1.21.4) of the CAGEr package fails to check with the following error:
* checking examples ... ERROR Running examples in ‘CAGEr-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: CustomConsensusClusters > ### Title: Expression levels of consensus cluster > ### Aliases: CustomConsensusClusters > ### CustomConsensusClusters,CAGEexp,GRanges-method > > ### ** Examples > > > cc <- consensusClustersGR(exampleCAGEexp) > CustomConsensusClusters(exampleCAGEexp, cc) Error in bplapply(seq_len(nblock), function(b) { : could not find function "bplapply" Calls: CustomConsensusClusters ... .CCtoSE -> .CCtoSE -> [ -> rowSums -> rowSums -> blockApply Execution halted
But I do not understand why bplapply
is not found since:
- CAGEr Imports
BiocParallel
, - CAGEr
importFrom(BiocParallel,bplapply)
, and CustomConsensusClusters
does not usebplapply
.
What am I missing ?