Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
biocparallel
•
reset
0
votes
3
replies
310
views
scran package: quickCluster and calculateSumFactors parallelization
BiocParallel
scran
updated 9 weeks ago by
ATpoint
★ 3.9k • written 9 weeks ago by
qwang178
• 0
1
vote
4
replies
447
views
BiocParallel serialization errors on Windows
variancePartition
BiocParallel
3 months ago
hayleyw
• 0
0
votes
2
replies
907
views
Error: BiocParallel errors
xcms
msdata
BiocParallel
6 months ago
mavamay
• 0
1
vote
11
replies
1.3k
views
BiocParallel 1.33.12 binary has incorrect library linkage on macOS x86
BiocParallel
updated 10 months ago by
Martin Morgan
25k • written 10 months ago by
Michael Steinbaugh
▴ 90
0
votes
2
replies
1.1k
views
Usinig BiocParallel package in R with M1 MAC
RStudio
R
M1
BiocParallel
Mac
updated 14 months ago by
Christian Mertes
• 0 • written 16 months ago by
me.achleitner
• 0
0
votes
1
reply
716
views
Biocparallel Error "Error: BiocParallel errors element index: 1, 2, 3 first error: unable to find an inherited method for function ‘bpbackend’ fo…
R
OUTRIDER
BiocParallel
updated 14 months ago by
Christian Mertes
• 0 • written 16 months ago by
me.achleitner
• 0
1
vote
1
reply
612
views
Limit the number of nodes in DESeq2
DESeq2
BiocParallel
updated 16 months ago by
ATpoint
★ 3.9k • written 16 months ago by
Sebastian
▴ 10
0
votes
0
replies
973
views
gseDo function issue
Biocpa
BiocParallel
17 months ago
meetdpanjwani1990
• 0
4
votes
13
replies
3.5k
views
BiocParallel error with ChIPQC
BiocManager
ChIPQC
RSamtools
BiocParallel
updated 14 months ago by
Rory Stark
★ 5.1k • written 21 months ago by
etiennedanis
• 0
1
vote
2
replies
2.4k
views
BiocParallel error when running DiffBind
BiocParallel
BiocPa
DiffBind
updated 23 months ago by
Martin Morgan
25k • written 2.0 years ago by
r.finn
▴ 10
1
vote
1
reply
712
views
Use MulticoreParam under BatchtoolsParam
BatchtoolsParam
MulticoreParam
BiocParallel
updated 24 months ago by
Martin Morgan
25k • written 2.0 years ago by
jianhai.zhang
• 0
2
votes
4
replies
1000
views
Load packages when using BatchtoolsParam
BatchtoolsParam
BiocParallel
24 months ago • updated 22 months ago
jianhai.zhang
• 0
3
votes
2
replies
1.1k
views
BiocParallel errors from muscat
BiocParallel
muscat
single-cell
24 months ago
tangming2005
▴ 190
0
votes
3
replies
664
views
How to get DESeq2 results in large count matix files?
DESeq2
BiocParallel
MulticoreParam
updated 2.1 years ago by
Michael Love
41k • written 2.1 years ago by
mathavanbioinfo
▴ 20
0
votes
0
replies
591
views
BiocParallel errors in XCMS peak-picking
BiocParallel
xcms
biocparallel
2.3 years ago
noerman
• 0
1
vote
5
replies
1.3k
views
slow bplapply?
BiocParallel
2.4 years ago • updated 15 months ago
Wu, Hao
▴ 20
3
votes
3
replies
1.6k
views
Ensuring reproducibility in BiocParallel SingleCellExperiment workflows
scater
SingleCellExperiment
BiocParallel
scuttle
scran
2.4 years ago
enricoferrero
▴ 660
0
votes
4
replies
1.7k
views
DESeq2::DESeq(..., parallel = TRUE) fails if a partition has only genes with 0 counts across all samples
DESeq2
BiocParallel
2.6 years ago
Steffi Grote
▴ 10
2
votes
2
replies
1.2k
views
scater::calculatePCA error when using BPPARAM = MulticoreParam
calculatePCA
BPPARAM
scater
BiocParallel
runPCA
2.8 years ago
doliv071
• 0
0
votes
1
reply
1.1k
views
Error while running variancePartition::dream()
variancePartition
limma
BiocParallel
2.9 years ago
Junghoon
▴ 10
0
votes
1
reply
1.0k
views
Excessive memory requirement of variancePartition::dream()
BiocParallel
limma
variancePartition
2.9 years ago • updated 2.7 years ago
Junghoon
▴ 10
0
votes
4
replies
1.0k
views
BiocParallel: bplapply invents data
BiocParallel
ShortRead
3.0 years ago
robmaz77
▴ 20
0
votes
0
replies
1.3k
views
BiocParallel errors with xcms
BiocParallel
xcms
3.0 years ago
Yuki
▴ 10
2
votes
2
replies
873
views
how to use biocParallel for large local variables?
BiocParallel
3.2 years ago
oyoung122
▴ 20
3
votes
3
replies
1.3k
views
first error: could not find function "readGAlignments" in BiocParallel
BiocParallel
3.2 years ago
Guandong Shang
▴ 40
1
vote
1
reply
1.3k
views
DiffBind error with background=TRUE in dba.normalize?
BiocParallel
DiffBind
parallel
updated 3.2 years ago by
Rory Stark
★ 5.1k • written 3.2 years ago by
Victor
• 0
0
votes
1
reply
816
views
addPatternDensity in 'qsea' takes too much time
MBD-seq
qsea
BiocParallel
updated 3.2 years ago by
Matthias Lienhard
▴ 240 • written 3.2 years ago by
mbk0asis
• 0
3
votes
7
replies
2.1k
views
Which version of R to use for "HiCDCPlus" "HiC-DC+"
HiC-DC+
HiCDCPlus
BiocParallel
updated 3.0 years ago by
koushik
• 0 • written 3.3 years ago by
Tay
▴ 10
0
votes
0
replies
660
views
Job:
Two Fellowship Positions in Bioinformatics and Toxicology are avaiable immediately at US EPA
job
updated 3.4 years ago by
Michael Love
41k • written 3.4 years ago by
whduke
• 0
7
votes
4
replies
1.6k
views
How does BiocParallel export variables to threads?
BiocParallel
SnowParam
parallel
updated 3.7 years ago by
Martin Morgan
25k • written 3.7 years ago by
gabriel.hoffman
▴ 100
0
votes
6
replies
1.1k
views
BiocParallel with drake hangs
BiocParallel
4.1 years ago
biomiha
▴ 20
2
votes
2
replies
690
views
Number of MPI slaves in BiocParallel
BiocParallel
updated 4.1 years ago by
Martin Morgan
25k • written 4.1 years ago by
Homer
• 0
0
votes
2
replies
781
views
Run jobs asynchronously with BiocParellel
BiocParallel
future
batchtools
updated 4.4 years ago by
Martin Morgan
25k • written 4.4 years ago by
Qiang
▴ 80
0
votes
2
replies
1.0k
views
Issue/Error with DEXSeq design formulae in testForDEU function
deseq2
DEXSeq
BioCParallel
updated 4.5 years ago by
Alejandro Reyes
★ 1.9k • written 4.5 years ago by
acciardo
• 0
1
vote
4
replies
1.9k
views
BiocParallel: What its the best way to pass large a dataset for parallel processing?
bioconductor
bplapply
bpiterate
iterator
BiocParallel
updated 4.7 years ago by
Martin Morgan
25k • written 4.7 years ago by
gabriel.hoffman
▴ 100
0
votes
1
reply
1.4k
views
ChIPQC BiocParallel errors
ChIPQC
ChIPQC error
BiocParallel
4.7 years ago
minervajunjun
• 0
2
votes
1
reply
1.9k
views
Rsubread installation problem
Rsubread
BiocParallel
updated 4.8 years ago by
Gordon Smyth
50k • written 4.8 years ago by
agustin.gonvi
▴ 20
2
votes
3
replies
1.4k
views
bplapply - only SerialParam or single worker Multicore working on R/macos 10.14
BiocParallel
mac
R
updated 5.0 years ago by
Martin Morgan
25k • written 5.0 years ago by
geo.vogler
▴ 10
0
votes
6
replies
1.5k
views
how to achieve reproducibility with BiocParallel regardless of number of threads and OS (set.seed is disallowed)
BiocParallel
updated 5.2 years ago by
Aaron Lun
★ 28k • written 5.2 years ago by
luluchen
• 0
3
votes
6
replies
1.3k
views
nbinomLRT function all cores usage
deseq2
nbinomLRT
sample size
biocparallel
updated 5.4 years ago by
davide risso
▴ 950 • written 5.4 years ago by
mcalgaro93
• 0
2
votes
5
replies
2.4k
views
Issue with BiocParallel
purecn
biocparallel
5.4 years ago
milos-91
• 0
6
votes
8
replies
1.9k
views
BioParallel::BatchtoolsParam() - how to pass customized resource variables to batchtool's "slurm-simple" template using BatchtoolsParam()?
biocparallel
BatchtoolsParam
updated 5.4 years ago by
Mike Smith
★ 6.4k • written 5.4 years ago by
Chao-Jen Wong
▴ 30
4
votes
2
replies
877
views
bpaggregate with formula returns strange error message
biocparallel
bpaggregate
aggregate
updated 5.7 years ago by
Martin Morgan
25k • written 5.7 years ago by
maltethodberg
▴ 170
5
votes
6
replies
2.8k
views
BiocParallel: database disk image is malformed
biocparallel
databases
updated 5.7 years ago by
Martin Morgan
25k • written 5.7 years ago by
Paul Shannon
▴ 470
1
vote
1
reply
1.5k
views
Installing package BiocParallel failed
biocparallel
updated 5.8 years ago by
Martin Morgan
25k • written 5.8 years ago by
Jiang, Mike
★ 1.3k
1
vote
5
replies
1.2k
views
Help using 'handler' function with bptry()
biocparallel
error handling
updated 5.8 years ago by
Martin Morgan
25k • written 5.8 years ago by
Peter Hickey
▴ 670
12
votes
15
replies
3.3k
views
error with HDF5Array
hdf5array
biocparallel
updated 5.8 years ago by
Mike Smith
★ 6.4k • written 5.9 years ago by
cath
▴ 30
0
votes
1
reply
1.2k
views
Write gds in parallel
gds
SNPRelate
BiocParallel
updated 5.9 years ago by
zhengx
▴ 30 • written 5.9 years ago by
Vinicius Henrique da Silva
▴ 40
1
vote
6
replies
1.6k
views
Disable messages for bplapply when in parallel
biocparallel
bplapply
updated 6.0 years ago by
Martin Morgan
25k • written 6.0 years ago by
ioannis.vardaxis
▴ 30
0
votes
3
replies
1.6k
views
BiocParallel NULL value passed as symbol address
BiocParallel
Rcpp
updated 6.0 years ago by
Martin Morgan
25k • written 6.0 years ago by
ioannis.vardaxis
▴ 30
50 results • Page
1 of 1
Recent ...
Replies
Comment: edgeR, 3 x 2 design with a batch effect and contrasts
by
JKim
• 0
Thank you. I think I found why the order matters. > Although an intercept-free design matrix has been coded using the 0+ notation, the in…
Comment: Unable to annotate ExpressionSet object from hugene11st chip
by
Efra
• 0
I did as you told, and after running ```eset.annot <- annotateEset(eset, hugene11sttranscriptcluster.db)``` I got the next output: ``` 'se…
Comment: BioC2024 abstract submission is open!
by
howell
• 0
What are the conditions for approval of people in difficult circumstances? I want this scholarship
Comment: European Bioconductor Conference 2023 planning
by
william
• 0
[@MariaDoyle][1] Without a doubt. In that position, I will be included in the discussion. [1]: https://support.bioconductor.org/u/239…
Comment: Problem converting msigdb Human symbols to Zebrafish in gmt format
by
Georg
• 0
Thank you for the detailed response. The code worked right away. I appreciate the quick response.
Votes
C: How to check that the reads in two fastq files are in the same order
Answer: edgeR, 3 x 2 design with a batch effect and contrasts
Answer: Need help with creating and plotting temporal clustering analysis of DEGs
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
Awards
• All
Popular Question
to
rproendo
▴ 20
Popular Question
to
Wolfgang RAFFELSBERGER
▴ 140
Popular Question
to
Dario Strbenac
★ 1.5k
Scholar
to
Hervé Pagès
16k
Popular Question
to
Gordon Smyth
50k
Locations
• All
India,
9 minutes ago
United States,
10 minutes ago
United States,
35 minutes ago
United States,
1 hour ago
United States,
1 hour ago
Traffic: 804 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6