How can I remove the ellipsis and get the complete sequence and results?
1
1
Entering edit mode
xieduo ▴ 10
@xieduo-14835
Last seen 6.2 years ago

Dear all,

We I use the KEGGREST,I come across a problem. When I use the function keggGet(c("hsa:10458"),"ntseq"), I get the result showed below

> library("KEGGREST")
> keggGet(c("hsa:10458"),"ntseq")
  A DNAStringSet instance of length 1
    width seq                                               names
[1]  1659 ATGTCTCTGTCTCGCTCAGAGGA...CCCGCACCCTGGCTGGAAGATGA hsa:10458 K05627 ...

However, how can I remove the ellipsis and get the complete sequence and results? Thank you!

keggrest biostrings • 919 views
ADD COMMENT
1
Entering edit mode
shepherl 3.8k
@lshep
Last seen 12 hours ago
United States

Using as.character() on your DNAStringSet might be the desired output. You can also get more information on using and working with DNAStringSets by looking at the help page ?DNAStringSet

ADD COMMENT

Login before adding your answer.

Traffic: 681 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6