Error using the makeTxDbFromGFF
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bright602 • 0
@bright602-14940
Last seen 3.1 years ago

Hi, I came across an error when building the TxDb from GFF as follow:

txdb <- makeTxDbFromGFF(gfffile, format="gff")

Import genomic features from the file as a GRanges object ... OK

Prepare the 'metadata' data frame ... OK

Make the TxDb object ... Error in .get_cds_IDX(type, phase) : 

 the "phase" metadata column must contain 0, 1, or 2, for all the CDS features

 

Thanks for your suggestions.

maketxdbfromgff • 503 views
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