Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
maketxdbfromgff
•
reset
2
votes
2
replies
1.3k
views
Problem with MakeTxDbFromGFF
makeTxDbFromGff
22 months ago
stacy.genovese
• 0
3
votes
4
replies
3.4k
views
Saving and retrieving TxDB object
makeTxDBFromGFF
EISA
updated 4.4 years ago by
James W. MacDonald
67k • written 4.4 years ago by
nishanthemje
• 0
0
votes
0
replies
1.8k
views
error with makeTxDbFromGFF
genomicfeatures
gff
custom genome
makeTxDbFromGFF
makeTxDbFromGRanges
5.8 years ago
xvazquezc
• 0
0
votes
1
reply
1.4k
views
Error in .merge_transcript_parts(transcripts)
maketxdbfromgff
6.2 years ago
csijcs
• 0
0
votes
2
replies
2.6k
views
makeTxDbFromGFF errors too many NAs and make.splicings
maketxdbfromgff
limma
updated 6.3 years ago by
Hervé Pagès
16k • written 6.3 years ago by
Karl Lundén
▴ 20
0
votes
1
reply
1.6k
views
makeTxDbFromGFF error "stop codons that cannot be mapped to an exon"
genomicfeatures
txdb
maketxdbfromgff
updated 6.5 years ago by
daniel.vantwisk
▴ 50 • written 6.5 years ago by
marisa.e.miller
• 0
0
votes
0
replies
1.1k
views
Error using the makeTxDbFromGFF
maketxdbfromgff
6.9 years ago
bright602
• 0
0
votes
1
reply
4.2k
views
create a txdb using makeTxDbFromGFF
bioconductor
txdb
maketxdbfromgff
7.1 years ago
Nader.Aryamanesh
• 0
0
votes
3
replies
4.1k
views
makeTxDbFromGFF Error: subscript contains NAs
genomicfeatures
granges
maketxdbfromgff
updated 7.4 years ago by
Hervé Pagès
16k • written 7.5 years ago by
marc_bes
• 0
1
vote
2
replies
1.3k
views
Error while using GenomicFeatures package
genomicfeatures
maketxdbfromgff
updated 7.9 years ago by
Hervé Pagès
16k • written 7.9 years ago by
TFony
▴ 10
3
votes
2
replies
2.5k
views
makeTxDbFromGFF drops genes which have multiple chromosome locations. (with iGenome GTF)
genomicfeatures
gtf
maketxdbfromgff
iGenome
updated 8.2 years ago by
Martin Morgan
25k • written 8.2 years ago by
Marlin
▴ 20
1
vote
2
replies
1.5k
views
mRNA start used instead of gene start in makeTxDbFromGFF
maketxdbfromgff
genomicfeatures
updated 8.7 years ago by
Hervé Pagès
16k • written 8.7 years ago by
TimothéeFlutre
▴ 80
4
votes
2
replies
1.5k
views
distinguish DataSource from Provider and ProviderVersion in makeTxDbPackage
genomicfeatures
txdb
maketxdbfromgff
metadata
updated 8.7 years ago by
Valerie Obenchain
★ 6.8k • written 8.7 years ago by
TimothéeFlutre
▴ 80
0
votes
5
replies
1.9k
views
makeTxDbFromGFF returns empty object
genomicfeatures
txdb
maketxdbfromgff
8.7 years ago
TimothéeFlutre
▴ 80
0
votes
0
replies
1.1k
views
Annotation missing when using makeTxDbFromGFF
makeTxDbFromGFF
8.9 years ago
Udi Landau
▴ 30
8
votes
7
replies
4.0k
views
Generating a proper TxDb instance from NCBI GFF Annotations File
ncbi
refseq
maketxdbfromgff
fetchExtendedChromInfoFromUCSC
genomeinfodb
updated 9.0 years ago by
Hervé Pagès
16k • written 9.0 years ago by
gokcen.eraslan
▴ 10
0
votes
7
replies
2.1k
views
Get wrong tx_type when using GenomicFeatures::makeTxDbFromGTF
genomicfeatures
maketxdbfromgff
tx_type
gtf
updated 9.1 years ago by
Hervé Pagès
16k • written 9.1 years ago by
Karolin Wiedemann
• 0
0
votes
0
replies
1.3k
views
Get wrong tx_type when using GenomicFeatures::makeTxDbFromGTF
genomicfeatures
maketxdbfromgff
tx_type
gtf
9.1 years ago
Karolin Wiedemann
• 0
0
votes
4
replies
2.2k
views
MakeTxDbFromGFF creates empty object
maketxdbfromgff
updated 9.2 years ago by
Hervé Pagès
16k • written 9.2 years ago by
rebecca.halbach
• 0
0
votes
7
replies
2.6k
views
makeTxDbFromGFF yields an empty TxDb
annotation
maketxdbfromgff
genomicfeatures
9.2 years ago
José Luis Lavín
▴ 10
0
votes
2
replies
2.5k
views
makeTxDbpackage after makeTxDbfromGFF --> Error in spc[[2]] : subscript out of bounds
gtf
TxDb
maketxdbfromgff
updated 9.6 years ago by
Hervé Pagès
16k • written 9.6 years ago by
yacine.badis
• 0
0
votes
2
replies
2.3k
views
makeTxDbFromGFF not capturing/displaying 'gene' records from GFF3 file.
genomicfeatures
makeTxDbFromGFF
updated 9.7 years ago by
Hervé Pagès
16k • written 9.7 years ago by
pterry
• 0
22 results • Page
1 of 1
Recent ...
Replies
Answer: promoters_txdb <- promoters(txdb, upstream = 2000) is not 2000
by
James W. MacDonald
67k
If you use `promoters` and do not provide an argument for something that has a default, you will get the default argument. Your last call t…
Comment: org.Hs.eg.db issue
by
k.panov
• 0
installed R on another PC, works perfectly. ergo, problem outside of R probably..... :-(
Comment: MBDseq analysis using qsea package
by
Lukas
▴ 20
Hi, I checked in with Matthias and here is his response: You need to indicate "samples": "The indices of the samples for which individu…
Comment: DESeq2 analysis with transcript counts
by
sindhuri
• 0
Thank you for the response. Currently I am using the R studio for analysis and Im running DESeq2 for analysis of the **transcript counts.ts…
Comment: iam not able to do retrive data using GEOquery R package
by
James W. MacDonald
67k
Another alternative is to use the `GEOmetadb` package ([vignette here)][1], which will allow you to make queries to identify GEO datasets t…
Votes
A: Linear regression in DESeq2
Answer: Is there any chance to solve "the model matrix is not full rank" in DESeq2?
Answer: Issue carrying out DiffBind Analysis at a predefined peak set
Answer: Differential variability modelling with vst() expression
Answer: Differential variability modelling with vst() expression
Awards
• All
Popular Question
to
Gordon Smyth
52k
Popular Question
to
linouhao
▴ 20
Popular Question
to
spg
• 0
Popular Question
to
otieno43
• 0
Popular Question
to
svlachavas
▴ 840
Locations
• All
United States,
37 minutes ago
United States,
53 minutes ago
United Kingdom,
2 hours ago
Kazakhstan,
2 hours ago
Qatar,
2 hours ago
Traffic: 852 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6