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Showing :
maketxdbfromgff
•
reset
2
votes
3
replies
2.0k
views
Problem with MakeTxDbFromGFF
makeTxDbFromGff
written 3.0 years ago by
stacy.genovese
• 0
3
votes
4
replies
4.3k
views
Saving and retrieving TxDB object
makeTxDBFromGFF
EISA
updated 5.5 years ago by
James W. MacDonald
68k • written 5.5 years ago by
nishanthemje
• 0
0
votes
0
replies
2.1k
views
error with makeTxDbFromGFF
genomicfeatures
gff
custom genome
makeTxDbFromGFF
makeTxDbFromGRanges
6.9 years ago
xvazquezc
• 0
0
votes
1
reply
1.7k
views
Error in .merge_transcript_parts(transcripts)
maketxdbfromgff
7.3 years ago
csijcs
• 0
0
votes
2
replies
2.9k
views
makeTxDbFromGFF errors too many NAs and make.splicings
maketxdbfromgff
limma
updated 7.4 years ago by
Hervé Pagès
16k • written 7.4 years ago by
Karl Lundén
▴ 20
0
votes
1
reply
1.9k
views
makeTxDbFromGFF error "stop codons that cannot be mapped to an exon"
genomicfeatures
txdb
maketxdbfromgff
updated 7.6 years ago by
daniel.vantwisk
▴ 50 • written 7.6 years ago by
marisa.e.miller
▴ 10
0
votes
0
replies
1.3k
views
Error using the makeTxDbFromGFF
maketxdbfromgff
8.1 years ago
bright602
• 0
0
votes
1
reply
4.8k
views
create a txdb using makeTxDbFromGFF
bioconductor
txdb
maketxdbfromgff
8.2 years ago
Nader.Aryamanesh
• 0
0
votes
3
replies
4.7k
views
makeTxDbFromGFF Error: subscript contains NAs
genomicfeatures
granges
maketxdbfromgff
updated 8.5 years ago by
Hervé Pagès
16k • written 8.6 years ago by
marc_bes
• 0
1
vote
2
replies
1.5k
views
Error while using GenomicFeatures package
genomicfeatures
maketxdbfromgff
updated 9.1 years ago by
Hervé Pagès
16k • written 9.1 years ago by
TFony
▴ 10
3
votes
2
replies
2.9k
views
makeTxDbFromGFF drops genes which have multiple chromosome locations. (with iGenome GTF)
genomicfeatures
gtf
maketxdbfromgff
iGenome
updated 9.3 years ago by
Martin Morgan
25k • written 9.3 years ago by
Marlin
▴ 20
1
vote
2
replies
1.8k
views
mRNA start used instead of gene start in makeTxDbFromGFF
maketxdbfromgff
genomicfeatures
updated 9.8 years ago by
Hervé Pagès
16k • written 9.8 years ago by
TimothéeFlutre
▴ 80
4
votes
2
replies
1.9k
views
distinguish DataSource from Provider and ProviderVersion in makeTxDbPackage
genomicfeatures
txdb
maketxdbfromgff
metadata
updated 9.8 years ago by
Valerie Obenchain
★ 6.8k • written 9.8 years ago by
TimothéeFlutre
▴ 80
0
votes
5
replies
2.4k
views
makeTxDbFromGFF returns empty object
genomicfeatures
txdb
maketxdbfromgff
9.8 years ago
TimothéeFlutre
▴ 80
0
votes
0
replies
1.3k
views
Annotation missing when using makeTxDbFromGFF
makeTxDbFromGFF
10.0 years ago
Udi Landau
▴ 30
8
votes
7
replies
4.9k
views
Generating a proper TxDb instance from NCBI GFF Annotations File
ncbi
refseq
maketxdbfromgff
fetchExtendedChromInfoFromUCSC
genomeinfodb
updated 10.1 years ago by
Hervé Pagès
16k • written 10.1 years ago by
gokcen.eraslan
▴ 10
0
votes
7
replies
2.6k
views
Get wrong tx_type when using GenomicFeatures::makeTxDbFromGTF
genomicfeatures
maketxdbfromgff
tx_type
gtf
updated 10.2 years ago by
Hervé Pagès
16k • written 10.2 years ago by
Karolin Wiedemann
• 0
0
votes
0
replies
1.5k
views
Get wrong tx_type when using GenomicFeatures::makeTxDbFromGTF
genomicfeatures
maketxdbfromgff
tx_type
gtf
10.2 years ago
Karolin Wiedemann
• 0
0
votes
4
replies
2.6k
views
MakeTxDbFromGFF creates empty object
maketxdbfromgff
updated 10.3 years ago by
Hervé Pagès
16k • written 10.3 years ago by
rebecca.halbach
• 0
0
votes
7
replies
3.0k
views
makeTxDbFromGFF yields an empty TxDb
annotation
maketxdbfromgff
genomicfeatures
10.3 years ago
José Luis Lavín
▴ 10
0
votes
2
replies
2.8k
views
makeTxDbpackage after makeTxDbfromGFF --> Error in spc[[2]] : subscript out of bounds
gtf
TxDb
maketxdbfromgff
updated 10.7 years ago by
Hervé Pagès
16k • written 10.7 years ago by
yacine.badis
• 0
0
votes
2
replies
2.6k
views
makeTxDbFromGFF not capturing/displaying 'gene' records from GFF3 file.
genomicfeatures
makeTxDbFromGFF
updated 10.8 years ago by
Hervé Pagès
16k • written 10.8 years ago by
pterry
• 0
22 results • Page
1 of 1
Recent ...
Replies
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
by
A.Barden
▴ 20
Thanks both for this useful information.
Comment: Reproducibility of code in various Bioconductor versions
by
Gordon Smyth
53k
SNPlocs.Hsapiens.dbSNP155.GRCh38 is available for download from the same location as always. It has not changed since Bioc 3.20: Presumabl…
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack
by
a2a2hd42aa
• 0
Similarly, for structural complexity in the [He777 Game][1] APK, having precise control over every detail is what makes a high-performance …
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
by
strawberry3
• 0
Hi, thank you all for the advice. Using James's advice, I managed to install SNPlocs.Hsapiens.dbSNP155.GRCh38, but it took almost half an …
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
by
James W. MacDonald
68k
As Robert and ATpoint have mentioned, you need to allow more time to download a large file like this. ``` > options(timeout = 5e5) > l…
Votes
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
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