Question: Unannotated genes in TopGO
0
gravatar for Yvan Wenger
13 months ago by
Yvan Wenger50
Yvan Wenger50 wrote:

Hello,

What is the correct way to input genes that do not have a GO annotation in the gene universe?

Should I just input

gene1    GO:0016021, GO:0016020

gene2

gene3    GO:0016021, GO:0016020, GO:0001584, GO:0007165, GO:0004984, GO:0007186, GO:0004872

Or should I put something like NOHIT or NA after gene2?

Many thanks !

Yvan

topgo go analysis • 269 views
ADD COMMENTlink written 13 months ago by Yvan Wenger50

How do you create the GOdata for topGO? As you show it seems like a list, but it is usually done from an annotation package. Have you checked it with the vignette?

ADD REPLYlink written 13 months ago by Lluís Revilla Sancho460
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