I got methylation Beta and p-value sheet file from GEO in .txt style.
In the Conumee vignettes, there is a description that "If raw IDAT files are unavailable, data can also be supplied by importing text-based input files, e.g. as generated by GenomeStudio or downloaded from the GEO repository. More details are given later."
This is what I really want to do!
Could anybody show me how to analyze Copy number variant using text-baset input files generated GenomeStudio(Illumina infinium 450K)?
Thanks in advance.