Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
450K
•
reset
0
votes
0
replies
581
views
cpgCollapse error
450K
blockfinder
cpgCollapse
minfi
20 months ago
edward.esiribloom
• 0
3
votes
6
replies
2.1k
views
Minfi can't combineArrays
RGset
combinearrays
450k
minfi
updated 3.3 years ago by
James W. MacDonald
67k • written 3.3 years ago by
Sophie Marion de Proce
• 0
0
votes
0
replies
887
views
Error when trying to read in idat files in methylumi
methylumi
450k
methylation
methylome
4.9 years ago
A
▴ 40
6
votes
3
replies
11k
views
Minfi issue: return code from pthread_create() is 22
minfi
450k
updated 21 months ago by
Sin
• 0 • written 5.4 years ago by
jshouse
▴ 10
0
votes
1
reply
2.3k
views
How to analyse 450k and EPIC methylation data together?
minfi
450k
EPIC
analysis
updated 5.3 years ago by
James W. MacDonald
67k • written 5.3 years ago by
maduran
• 0
0
votes
3
replies
1.4k
views
Limma for cell components effect on response
450k
EPIC
minfi
limma
cell components
updated 5.4 years ago by
Aaron Lun
★ 28k • written 5.4 years ago by
antgomo
• 0
1
vote
6
replies
2.4k
views
Reading 450k data in minfi
450K
minfi
updated 5.8 years ago by
laurenz.holcik
• 0 • written 5.8 years ago by
lalchungnungabt17
• 0
0
votes
3
replies
1.7k
views
QC and normalization of 450K data from CSVs instead of IDATs
450K
CSV
normalization
minfi
ChAMP
updated 6.5 years ago by
Yuan Tian
▴ 290 • written 6.5 years ago by
Simone
▴ 190
0
votes
0
replies
1.2k
views
how to analyze "Beta-score" and get CNVdata using Comunee
conumee
CNV
450K
6.8 years ago
bird.of.clockwise
• 0
0
votes
0
replies
1.4k
views
Error when using Champ.SVD() function
champ
champs.svd()
450K
illimina 450k methylation
champ 2.8.9
7.2 years ago
david.ch
• 0
0
votes
0
replies
1.5k
views
minfi estimateCellCounts normalized beta values adjusted for cell type
minfi
450k
7.5 years ago
igor
▴ 50
6
votes
2
replies
4.8k
views
Plotting Differentially Methylated Regions
minfi
bumphunter
450k
region
updated 8.0 years ago by
Dimitris Polychronopoulos
▴ 80 • written 8.7 years ago by
cardenasca
▴ 40
0
votes
2
replies
2.3k
views
Error using Bumphunter and Block finder using CHAMP
champ
methylation
450k
8.0 years ago
hrishi27n
▴ 20
0
votes
0
replies
1.3k
views
Error in assay colnames when using readGEORawFile function in "minfi" package
minfi
methylation
450k
8.0 years ago
moonkinwen
• 0
2
votes
1
reply
1.8k
views
Minfi: estimateCellCounts rgSet
minfi
450k
flowsorted.blood.450k
updated 8.0 years ago by
Habil Zare
▴ 200 • written 8.7 years ago by
cardenasca
▴ 40
0
votes
0
replies
1.6k
views
News:
ChAMP2 is online
epigenetics
EPIC
450K
ChAMP
News
8.2 years ago
Yuan Tian
▴ 90
0
votes
1
reply
2.2k
views
News:
Bug in ChAMP package champ.SVD() function
champ
methylation
450k
SVD
EPIC
News
8.3 years ago
Yuan Tian
▴ 90
3
votes
3
replies
3.5k
views
Adjustment of covariates in 450k data using Limma
limma
covariates
450k
8.7 years ago
AST
▴ 60
4
votes
4
replies
3.4k
views
How to remove unwanted probes before normalization in 450k data
minfi
450k
champ
rnbeads
updated 8.7 years ago by
James W. MacDonald
67k • written 8.8 years ago by
AST
▴ 60
4
votes
10
replies
4.9k
views
Illumina MethylationEPIC vs. 450K
methylumi
minfi
illuminahumanmethylation450k.db
450k
methyanalysis
updated 8.8 years ago by
Peter Hickey
▴ 740 • written 8.8 years ago by
Ahdee
▴ 50
0
votes
0
replies
1.6k
views
How can I do paired test on my Illumina 450k idat files with ChAMP package?
Illumina
450k
ChAMP
paired test
8.8 years ago
walter_teng
• 0
3
votes
1
reply
1.4k
views
two 450K methylation array manifests. where is the difference?
methylation
450k
8.9 years ago • updated 8.8 years ago
Pablo marin-garcia
▴ 90
0
votes
0
replies
1.5k
views
Repetitive motifs on Illumina 450k derived sequences
illumina
450k
motifs
meme
8.9 years ago
Gustavo Fernández Bayón
▴ 440
0
votes
6
replies
6.7k
views
ComBat with multiple batches
sva
combat
450k
8.9 years ago
ben.run974
• 0
0
votes
4
replies
2.8k
views
preprocessFunnorm in minfi
minfi
450k
illuminahumanmethylation450k.db
normalization
updated 9.0 years ago by
James W. MacDonald
67k • written 9.0 years ago by
b.tawk
• 0
1
vote
7
replies
3.9k
views
Loading beta values into minfi
minfi
450k
updated 9.1 years ago by
Kasper Daniel Hansen
★ 6.5k • written 9.1 years ago by
CC
▴ 10
0
votes
2
replies
2.0k
views
Loading RData files into ChAMP
microarray
champ
450k
updated 9.2 years ago by
champ450k
• 0 • written 9.2 years ago by
CC
▴ 10
0
votes
0
replies
1.5k
views
minfi v1.14 through champ: read.450k error with file path name
minfi
champ
illumina
450k
9.3 years ago
jeroen
• 0
1
vote
2
replies
2.1k
views
QC/normalization standards for cancer studies with 450k array data
minfi
watermelon
cancer
450k
normalization
updated 9.4 years ago by
Kasper Daniel Hansen
★ 6.5k • written 9.4 years ago by
metamaden
▴ 10
6
votes
3
replies
3.5k
views
Limma on Methylation Data - Fold Change Question
limma
450k
updated 9.4 years ago by
Aaron Lun
★ 28k • written 9.4 years ago by
andrew.j.skelton73
▴ 370
0
votes
4
replies
1.9k
views
Use of confounders in downstream analysis
limma
GSA
confounding
within-pair analysis
450k
9.6 years ago
Aileen Bahl
▴ 10
0
votes
1
reply
4.5k
views
methyAnalysis M values and Beta Values
methyAnalysis
methyanalysis
450k
updated 9.8 years ago by
Pan Du
▴ 80 • written 9.8 years ago by
andrew.j.skelton73
▴ 370
1
vote
2
replies
2.5k
views
Bias correction for enrichment analysis of 450k methylation data => feed bias adjusted genes into IPA
goseq
450k
enrichment
updated 9.8 years ago by
belinda.phipson
▴ 40 • written 9.8 years ago by
Ed Schwalbe
▴ 10
33 results • Page
1 of 1
Recent ...
Replies
Comment: DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMe
by
ATpoint
★ 4.6k
I think you run into the common pitfall that you treat results as categorical (significant, not significant) whereas in reality the results…
Comment: DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMe
by
swbarnes2
★ 1.4k
It would probably help if you broke out the raw and normalized read counts for all the samples.
Comment: RSubread output significantly different from bash Subread output
by
Aimee
• 0
Hi Gordon, Thank you so much for this response. I went back and checked, and you are absolutely correct that it was shown in the settings b…
Answer: Can we get beta values with DMRcate package
by
James W. MacDonald
67k
If you get an error that says ``` Error in getCollapsedBetas(myAnnotation) : could not find function "getCollapsedBetas" ``` It …
Comment: What type of counts data to import for performing Isoform analysis in edgeR
by
ATpoint
★ 4.6k
I think this already happened, see https://github.com/nf-core/rnasplice/issues/162
Votes
Answer: RSubread output significantly different from bash Subread output
Answer: RSubread output significantly different from bash Subread output
Answer: RSubread output significantly different from bash Subread output
Comment: What type of counts data to import for performing Isoform analysis in edgeR
Answer: Running multiple KNN queries in parallel
Awards
• All
Teacher
to
Gordon Smyth
52k
Scholar
to
Aaron Lun
★ 28k
Teacher
to
Michael Love
43k
Popular Question
to
Dario Strbenac
★ 1.5k
Scholar
to
ATpoint
★ 4.6k
Locations
• All
WEHI, Melbourne, Australia,
15 minutes ago
United States,
1 hour ago
Germany,
1 hour ago
United States,
1 hour ago
United States,
1 hour ago
Traffic: 678 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6