packageVersion("tximport")  '1.6.0'
I'm following this guide and when testing with a single table from stringtie, I get the following error:
txi <- tximport(files, type = "stringtie", tx2gene = tx2gene) Error in match.arg(type, c("none", "salmon", "sailfish", "kallisto", "rsem")) : 'arg' should be one of “none”, “salmon”, “sailfish”, “kallisto”, “rsem”
After checking the github repo, the
NEWS file states that stringtie support was added in
1.8, which isn't available in bioconductor and the development version is
1.7.13. It would be useful if that guide adds some info regarding the
tximport version used to carry out all those analyses. I can try installing from github, but i wanted to know what is the preferred way to get the last stable version of this package.