topGO (Version: 2.30.1) - weight01 algorithm
0
1
Entering edit mode
digrigor ▴ 10
@digrigor-15309
Last seen 3.6 years ago

Hello,

I am using topGO to conduct a enrichment analysis for gene ontology for differentialy expressed genes determined from my RNA-Seq data.

Currently, I am trying to compare between "elim", "weight" and "weight01" algorithms. 

"elim" and "weight" algorithms are really well explained in the cited article: https://academic.oup.com/bioinformatics/article/22/13/1600/193669 . However, for the "weight01" algorithm there is only a short explanation in the provided vignette saying: "weight01 is a mixture between the elim and the weight algorithms and it will be referred as weight01". 

Could someone help me understand how "weight01" values are calculated? 

Is there any article I am missing regarding to the calculation of the weight01 values?

Thank you,

topgo gene ontology pathway analysis rnaseq DEG • 854 views
ADD COMMENT

Login before adding your answer.

Traffic: 375 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6