Showing : topgo • reset
0
votes
5
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388
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Error when running topGO with KS statistic and elim agorithm
topGO
9 weeks ago • updated 7 weeks ago A. denDekker • 0
1
vote
2
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703
views
Access genes associated with GO terms for a topGO object created with gene2GO
topGO
6 months ago Dan • 0
0
votes
2
replies
755
views
enrichPlot error when plotting topGO results
topGO enrichplot
updated 9 months ago by 66k • written 9 months ago by • 0
0
votes
1
reply
636
views
library(topGO) query
topGO scRNAseq
updated 12 months ago by ▴ 780 • written 12 months ago by • 0
1
vote
1
reply
642
views
urgent error for producing table of topGO() annotated DMPs methylation
methylationArrayAnalysis topGO missMethyl MethylationArrayData MethylationArray
updated 15 months ago by ▴ 40 • written 15 months ago by • 0
0
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1
reply
925
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In .local(object, test.stat, ...) : No enrichment can pe performed - there are no feasible GO terms!
topGO
updated 15 months ago by 66k • written 15 months ago by • 0
0
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0
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518
views
topGO: how do I retrieve my genes contributing to the GO term enrichment
gene enrichment topGO GO retrieve
15 months ago Priya • 0
1
vote
1
reply
1.3k
views
topGo error loading data
topGO GO
19 months ago peter • 0
1
vote
0
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875
views
adjusted p-values with topGO elim.KS method
topGO Ontology DifferentialExpression
22 months ago Kevin Gregory ▴ 10
0
votes
4
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2.9k
views
How to get significant genes annotated to go term using TopGO?
topGO
updated 2.0 years ago by ▴ 730 • written 2.1 years ago by ▴ 10
1
vote
3
replies
2.0k
views
Trouble importing my own Gene Ontology Annotation into topGO
Annotation GeneOntology topGO GO
updated 2.1 years ago by 66k • written 2.1 years ago by ▴ 60
0
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5
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2.3k
views
GO enrichment with non-model organism, supplying GO mappings
clusterProfiler goseq topGO DESeq2
updated 2.2 years ago by 66k • written 2.2 years ago by ▴ 10
0
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0
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654
views
What exactly are Nontrivial node in topGO analysis?
topGO GO
2.3 years ago theophile • 0
0
votes
6
replies
1.6k
views
extract significant gene list from specific GO namber
topGO
updated 2.4 years ago by 66k • written 2.4 years ago by • 0
4
votes
7
replies
2.2k
views
Updating org.Sc.sgd.db, and integration with topGO
GeneTonic org.Sc.sgd.db pcaExplorer topGO EnrichmentBrowser
updated 2.5 years ago by ▴ 180 • written 2.5 years ago by • 0
0
votes
1
reply
1.2k
views
Help me do a gene enrichment analysis
DESeq2 topGO heatmaps
updated 2.9 years ago by ▴ 40 • written 2.9 years ago by • 0
0
votes
1
reply
926
views
Gene ontology of differentially expressed genes in R
topGO limma DEP
updated 3.0 years ago by 66k • written 3.0 years ago by • 0
0
votes
1
reply
907
views
topGo GenTable returns result column as character
GenTable topGO
updated 3.4 years ago by 66k • written 3.4 years ago by • 0
0
votes
0
replies
687
views
topGO weight01 method: potential bug in the code
topGO weight01
3.4 years ago Vladimir • 0
1
vote
3
replies
1.5k
views
topGO enrichment analysis, ontology selection.
topGO enrichmentanalysis geneontology
updated 3.5 years ago by ▴ 730 • written 3.5 years ago by • 0
2
votes
0
replies
1.0k
views
Saving the results of the topGO package as an R object (rda/rds file).
RNASeq GO topGO Pathways
3.5 years ago Ben ▴ 50
1
vote
1
reply
1.8k
views
TopGO : significant GO term, but 0 gene significant in this GO term (with elim-ks method)
topGO
updated 3.5 years ago by 66k • written 3.5 years ago by • 0
2
votes
1
reply
2.0k
views
topGO expected values showing NA
GO hgu133plus2 topGO GO hgu133plus2 topGO
updated 3.5 years ago by ▴ 20 • written 11.4 years ago by ▴ 340
1
vote
3
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1.5k
views
topGo custom Annotation table
customannotation enrichmentanalysis topGO
updated 3.5 years ago by 66k • written 3.5 years ago by • 0
0
votes
0
replies
819
views
Functional enrichment analysis for genomic data from non-model organism annotated based on model organism
DOSE hypeR goTools GOstats topGO
3.7 years ago Madza Farias-Virgens • 0
0
votes
7
replies
2.6k
views
topGO: GO term enrichment analysis of differentially expressed genes (!) including fold-change (!)
foldchange topGO DifferentialExpression enrichment
updated 3.7 years ago by 51k • written 3.7 years ago by ▴ 20
0
votes
4
replies
1.2k
views
topGO "argument is of length zero" error
GO.db topGO
updated 3.7 years ago by 66k • written 3.7 years ago by • 0
1
vote
6
replies
1.6k
views
How to create geneselectionfunction in TopGO: Error in .local(.Object, ...) : allGenes should be a factor or a numeric vector
R TopGO Geneenrichment
updated 3.8 years ago by 66k • written 3.8 years ago by • 0
3
votes
4
replies
1.7k
views
Different geneset same p-values in topGO
topgo bug
7.5 years ago • updated 3.8 years ago Lluís Revilla Sancho ▴ 730
4
votes
4
replies
1.4k
views
Replicating GO website analysis with bioconductor packages (topGO?)
topGO Gene Ontology enrichment panther.db
updated 3.9 years ago by 51k • written 3.9 years ago by ▴ 120
2
votes
3
replies
1.2k
views
Error in topGO analysis
software error topGO go
updated 3.9 years ago by ★ 4.0k • written 3.9 years ago by • 0
0
votes
3
replies
1.0k
views
Use topGOdata in devtools package
topGO devtools R
updated 4.0 years ago by 66k • written 4.0 years ago by • 0
1
vote
1
reply
1.2k
views
Error in GO enrichment with topGO
topGO microarray Gene ontology
updated 4.0 years ago by 66k • written 4.0 years ago by ▴ 10
4
votes
8
replies
6.2k
views
topGO error: allGenes should be a factor or a numeric vector
topGO topgo GO term analysis
updated 4.0 years ago by ★ 4.0k • written 4.0 years ago by ▴ 10
4
votes
8
replies
2.4k
views
Don't let TopGo to trimm long GO names
go software error topgo rna-seq
updated 18 months ago by 66k • written 4.2 years ago by ▴ 30
5
votes
7
replies
1.2k
views
Unexpected error with topGO, cannot build topGOdata object
topGO
4.2 years ago abf ▴ 30
0
votes
1
reply
734
views
Missing ALL library in BiocManager using topGO
topGO
updated 4.2 years ago by 66k • written 4.2 years ago by • 0
1
vote
3
replies
1.6k
views
TopGO significant genes
TopGO GO
4.3 years ago Al-a ▴ 10
0
votes
14
replies
2.5k
views
annFUN error TOPGO
TOPGO annFUN error
updated 4.3 years ago by ★ 4.0k • written 4.3 years ago by • 0
0
votes
1
reply
951
views
Diagnosing topGo issue - single enriched gene per enriched GO term
topGo gene enrichment ontology analysis
5.0 years ago s.bourne • 0
3
votes
3
replies
1.3k
views
Discrepancies between topGO output and input
go topGO gene ontology enrichment
updated 5.1 years ago by 66k • written 5.1 years ago by • 0
2
votes
2
replies
2.2k
views
topGO package unable to find library(ALL) and data(ALL)
topGO software error
updated 5.1 years ago by 66k • written 5.1 years ago by ▴ 60
0
votes
3
replies
1.4k
views
usage of topGO after limma
limma topGO microarray
updated 5.3 years ago by 51k • written 5.3 years ago by • 0
0
votes
0
replies
1.1k
views
topGO::annFUN.org() problem due to case-sensitivity of OrgDb field names
topGO AnnotationForge
5.4 years ago psutton • 0
1
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1
reply
1.2k
views
How to retreive topGO significant IDs of genes after enrichment test ?
topGO significant enrichment genes IDs
5.5 years ago David ROUX ▴ 20
0
votes
1
reply
1.7k
views
topGO: "There are no adj nodes for node"
software error topGO org.hs.eg.db
5.6 years ago natske ▴ 10
2
votes
6
replies
2.0k
views
topGO: GO terms in gene annotation do not match significant GO term output
rnaseq topgo go enrichment
updated 5.7 years ago by 66k • written 5.7 years ago by • 0
3
votes
9
replies
4.9k
views
topGO "invalid argument to unary operator"
software error topgo
updated 5.7 years ago by 66k • written 5.7 years ago by • 0
0
votes
0
replies
1.2k
views
topGO analysis runTest: non-numeric argument to binary operator
topGO
5.8 years ago Dave Th. • 0
0
votes
0
replies
1.3k
views
topGO: how to print GO descriptions only when using showSigOfNodes?
topgo
5.9 years ago anton.kratz ▴ 60
50 results • Page 1 of 1
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Comment: 'path' must be string by James W. MacDonald 66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string by cpierce2 • 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest by Robert • 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta by Guido Hooiveld ★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta by Michael Love 42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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