Showing : topgo • reset
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Help me do a gene enrichment analysis
DESeq2 topGO heatmaps
updated 19 days ago by ▴ 20 • written 19 days ago by • 0
0
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1
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85
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Gene ontology of differentially expressed genes in R
topGO limma DEP
updated 6 weeks ago by 58k • written 6 weeks ago by • 0
0
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1
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135
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topGo GenTable returns result column as character
GenTable topGO
updated 6 months ago by 58k • written 6 months ago by • 0
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0
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134
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topGO weight01 method: potential bug in the code
topGO weight01
7 months ago Vladimir • 0
1
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3
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268
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topGO enrichment analysis, ontology selection.
topGO enrichmentanalysis geneontology
updated 7 months ago by ▴ 650 • written 7 months ago by • 0
1
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0
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130
views
Saving the results of the topGO package as an R object (rda/rds file).
RNASeq GO topGO Pathways
7 months ago Ben ▴ 20
1
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1
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273
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TopGO : significant GO term, but 0 gene significant in this GO term (with elim-ks method)
topGO
updated 7 months ago by 58k • written 7 months ago by • 0
0
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1
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974
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topGO expected values showing NA
GO hgu133plus2 topGO GO hgu133plus2 topGO
updated 8 months ago by • 0 • written 8.5 years ago by ▴ 340
1
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3
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268
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topGo custom Annotation table
customannotation enrichmentanalysis topGO
updated 8 months ago by 58k • written 8 months ago by • 0
0
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0
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159
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Functional enrichment analysis for genomic data from non-model organism annotated based on model organism
DOSE hypeR goTools GOstats topGO
9 months ago Madza Farias-Virgens • 0
0
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7
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465
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topGO: GO term enrichment analysis of differentially expressed genes (!) including fold-change (!)
foldchange topGO DifferentialExpression enrichment
updated 10 months ago by 43k • written 10 months ago by • 0
0
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4
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341
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topGO "argument is of length zero" error
GO.db topGO
updated 10 months ago by 58k • written 10 months ago by • 0
1
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6
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317
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How to create geneselectionfunction in TopGO: Error in .local(.Object, ...) : allGenes should be a factor or a numeric vector
R TopGO Geneenrichment
updated 11 months ago by 58k • written 11 months ago by • 0
3
votes
4
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757
views
Different geneset same p-values in topGO
topgo bug
4.7 years ago • updated 12 months ago Lluís Revilla Sancho ▴ 650
4
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4
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357
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Replicating GO website analysis with bioconductor packages (topGO?)
topGO Gene Ontology enrichment panther.db
updated 12 months ago by 43k • written 12 months ago by ▴ 120
2
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3
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237
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Error in topGO analysis
software error topGO go
updated 12 months ago by 3.4k • written 12 months ago by • 0
0
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3
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216
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Use topGOdata in devtools package
topGO devtools R
updated 13 months ago by 58k • written 13 months ago by • 0
1
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1
reply
264
views
Error in GO enrichment with topGO
topGO microarray Gene ontology
updated 14 months ago by 58k • written 14 months ago by ▴ 10
4
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8
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1.5k
views
topGO error: allGenes should be a factor or a numeric vector
topGO topgo GO term analysis
updated 14 months ago by 3.4k • written 14 months ago by ▴ 10
2
votes
5
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392
views
Don't let TopGo to trimm long GO names
go software error topgo rna-seq
15 months ago morteza.aslanzadeh ▴ 20
5
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7
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275
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Unexpected error with topGO, cannot build topGOdata object
topGO
16 months ago abf ▴ 30
0
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1
reply
140
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Missing ALL library in BiocManager using topGO
topGO
updated 16 months ago by 58k • written 16 months ago by • 0
1
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3
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192
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TopGO significant genes
TopGO GO
17 months ago Al-a ▴ 10
0
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14
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443
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annFUN error TOPGO
TOPGO annFUN error
updated 17 months ago by 3.4k • written 17 months ago by • 0
0
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1
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307
views
Diagnosing topGo issue - single enriched gene per enriched GO term
topGo gene enrichment ontology analysis
2.1 years ago s.bourne • 0
3
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3
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377
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Discrepancies between topGO output and input
go topGO gene ontology enrichment
updated 2.2 years ago by 58k • written 2.2 years ago by • 0
2
votes
2
replies
733
views
topGO package unable to find library(ALL) and data(ALL)
topGO software error
updated 2.3 years ago by 58k • written 2.3 years ago by ▴ 50
0
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3
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464
views
usage of topGO after limma
limma topGO microarray
updated 2.5 years ago by 43k • written 2.5 years ago by • 0
0
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0
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394
views
topGO::annFUN.org() problem due to case-sensitivity of OrgDb field names
topGO AnnotationForge
2.5 years ago psutton • 0
1
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1
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414
views
How to retreive topGO significant IDs of genes after enrichment test ?
topGO significant enrichment genes IDs
2.6 years ago David ROUX ▴ 10
0
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1
reply
642
views
topGO: "There are no adj nodes for node"
software error topGO org.hs.eg.db
2.8 years ago natske ▴ 10
2
votes
6
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546
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topGO: GO terms in gene annotation do not match significant GO term output
rnaseq topgo go enrichment
updated 2.8 years ago by 58k • written 2.8 years ago by • 0
3
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9
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1.5k
views
topGO "invalid argument to unary operator"
software error topgo
updated 2.8 years ago by 58k • written 2.8 years ago by • 0
0
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0
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638
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topGO analysis runTest: non-numeric argument to binary operator
topGO
2.9 years ago Dave Th. • 0
0
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0
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480
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topGO: how to print GO descriptions only when using showSigOfNodes?
topgo
3.0 years ago anton.kratz ▴ 60
0
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4
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826
views
How do you specify "chip" in printGenes of TopGO for maize data
TopGo printGenes
updated 3.1 years ago by 58k • written 3.1 years ago by • 0
3
votes
3
replies
479
views
DEXUSResult as.data.frame doesn't work well if topGO is loaded
dexus topgo
updated 3.1 years ago by 58k • written 3.1 years ago by • 0
0
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0
replies
306
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TopGOdata Object error
topgo
3.2 years ago s1607338 • 0
1
vote
1
reply
397
views
topGO enrichment analysis
topgo
3.2 years ago prakashpandey1111 • 0
2
votes
4
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506
views
topGO: how to rettrieve (long) GO term description without abbreviating
topGO
3.2 years ago al-ash ▴ 30
0
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1
reply
479
views
TopGO ks test using a score different from p-value
topgo ks score kolmogorov-smirnov test go enrichment
updated 3.2 years ago by ▴ 650 • written 3.2 years ago by • 0
1
vote
0
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823
views
topGO (Version: 2.30.1) - weight01 algorithm
topgo gene ontology pathway analysis rnaseq DEG
3.5 years ago digrigor ▴ 10
0
votes
2
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493
views
Using topGO for GO Enrichment on methylation markers (Illumina 450k)
topGO illuminahumanmethylation450k.db
3.5 years ago dusan.petrovic • 0
0
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1
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707
views
topGO error : could not find function "annotationFun"
topGO R
3.6 years ago User • 0
1
vote
3
replies
1.3k
views
AffyLib query in topGO
topGO affy
updated 3.6 years ago by 58k • written 3.6 years ago by • 0
0
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1
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482
views
Unannotated genes in TopGO
TopGO go analysis
3.6 years ago Yvan Wenger ▴ 50
2
votes
1
reply
720
views
TopGO - Incorrect mapping genes to GO terms
topgo go org.mm.eg.db
updated 3.6 years ago by 58k • written 3.6 years ago by • 0
0
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4
replies
653
views
Error topGO printGenes
topGo
3.6 years ago irving.jgalo23 • 0
0
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1
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1.1k
views
using other ontologies in topGO && building GO.db like database for GO-like ontologies
GO topGO GO topGO
updated 3.7 years ago by ▴ 50 • written 7.5 years ago by ▴ 10
1
vote
2
replies
2.2k
views
topGO and font size in the graph plots
topGO topGO
updated 3.7 years ago by ▴ 10 • written 13.0 years ago by ▴ 10
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Can you grant the public caccess to you fcs to reproduce your issue?
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