library(KEGGREST)
> names(keggGet("map07049")[[1]])
[1] "ENTRY" "NAME" "PATHWAY_MAP" "COMPOUND" "REFERENCE"
I need to get gene list (hugo-symbol) in each pathway. How can I get this from KEGGREST?
> sessionInfo()
R version 3.3.3 (2017-03-06)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: openSUSE 13.1 (Bottle) (x86_64)
locale:
[1] LC_CTYPE=en_GB.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_GB.UTF-8 LC_COLLATE=en_GB.UTF-8
[5] LC_MONETARY=en_GB.UTF-8 LC_MESSAGES=en_GB.UTF-8
[7] LC_PAPER=en_GB.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] KEGGREST_1.14.1
loaded via a namespace (and not attached):
[1] zlibbioc_1.20.0 httr_1.3.1 R6_2.2.2
[4] IRanges_2.8.2 XVector_0.14.1 parallel_3.3.3
[7] tools_3.3.3 curl_3.1 Biostrings_2.42.1
[10] S4Vectors_0.12.2 BiocGenerics_0.20.0 stats4_3.3.3
[13] png_0.1-7