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Question: GenomicRanges::slidingWindows - method is not in the library
0
gravatar for m.boltengagen
6 days ago by
m.boltengagen0 wrote:

Hello everybody,

I found a method to split genomic range into windows using slidingWindows(x, width, step=1L) method in the Genomic Ranges library. Unfortunately, I can not find this method. Looks like it does not exists.
Could you please suggest what to do?

ADD COMMENTlink modified 4 days ago • written 6 days ago by m.boltengagen0

Could you please include your sessionInfo()

ADD REPLYlink modified 6 days ago • written 6 days ago by shepherl ♦♦ 560
0
gravatar for m.boltengagen
4 days ago by
m.boltengagen0 wrote:
> sessionInfo()
R version 3.2.3 (2015-12-10)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 16.04.3 LTS

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C               LC_TIME=de_DE.UTF-8        LC_COLLATE=en_US.UTF-8     LC_MONETARY=de_DE.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=de_DE.UTF-8       LC_NAME=C                  LC_ADDRESS=C               LC_TELEPHONE=C             LC_MEASUREMENT=de_DE.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

loaded via a namespace (and not attached):
[1] tools_3.2.3
ADD COMMENTlink written 4 days ago by m.boltengagen0
0
gravatar for m.boltengagen
4 days ago by
m.boltengagen0 wrote:

Sorry for disturbance, but upgrade helped.
All packages were recently installed but they were obviously too old.
 

Solution:

sudo -H gedit /etc/apt/sources.list
# Add to the sources list:
deb http://cran.rstudio.com/bin/linux/ubuntu xenial/

sudo apt-get update
sudo apt-get install r-base

source("https://bioconductor.org/biocLite.R")
biocLite()

ADD COMMENTlink written 4 days ago by m.boltengagen0
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