GenomicRanges::slidingWindows - method is not in the library
2
0
Entering edit mode
@mboltengagen-14260
Last seen 4.5 years ago

Hello everybody,

I found a method to split genomic range into windows using slidingWindows(x, width, step=1L) method in the Genomic Ranges library. Unfortunately, I can not find this method. Looks like it does not exists.
Could you please suggest what to do?

genomicranges-method slidingwindows • 856 views
ADD COMMENT
0
Entering edit mode

Could you please include your sessionInfo()

ADD REPLY
0
Entering edit mode
@mboltengagen-14260
Last seen 4.5 years ago
> sessionInfo()
R version 3.2.3 (2015-12-10)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 16.04.3 LTS

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C               LC_TIME=de_DE.UTF-8        LC_COLLATE=en_US.UTF-8     LC_MONETARY=de_DE.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=de_DE.UTF-8       LC_NAME=C                  LC_ADDRESS=C               LC_TELEPHONE=C             LC_MEASUREMENT=de_DE.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

loaded via a namespace (and not attached):
[1] tools_3.2.3
ADD COMMENT
0
Entering edit mode
@mboltengagen-14260
Last seen 4.5 years ago

Sorry for disturbance, but upgrade helped.
All packages were recently installed but they were obviously too old.
 

Solution:

sudo -H gedit /etc/apt/sources.list
# Add to the sources list:
deb http://cran.rstudio.com/bin/linux/ubuntu xenial/

sudo apt-get update
sudo apt-get install r-base

source("https://bioconductor.org/biocLite.R")
biocLite()

ADD COMMENT

Login before adding your answer.

Traffic: 989 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6