PureCN error: zero-length 'labels' specified
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twtoal • 0
@twtoal-15473
Last seen 6 months ago

A PureCN run had this error at the very end of the run, after it had apparently finished:

INFO [2018-04-25 15:13:34] Done.
INFO [2018-04-25 15:13:34] ------------------------------------------------------------
Error in text.default(x = peak.ideal.means[as.character(r$ML.C[r$ML.SOMATIC])][idx.labels],  : 
  zero-length 'labels' specified
Calls: plotAbs -> plotAbs -> .plotTypeAF -> text -> text.default
Execution halted

The full log file and .rds file for this sample (VO-56T3) can be found at: 

https://www.dropbox.com/s/jpuyutsnn8qry82/VO-56T3.log?dl=0

https://www.dropbox.com/s/neh6ere2subyc1j/VO-56T3.rds?dl=0

 

PureCN • 402 views
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@markusriester-9875
Last seen 28 days ago

Thanks a lot, I can reproduce. You can delete the files.

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Should be fixed in 1.9.47. 

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twtoal • 0
@twtoal-15473
Last seen 6 months ago

I'm running the current development version, 1.9.45.  When do you think 1.9.47 will be released?

 

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This should show up in devel tomorrow. It will very likely become the new stable 1.10.0 on Tuesday.

You can always get the latest GitHub version (currently 1.9.47) with BiocInstaller::biocLite("lima1/PureCN")

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