Question

PureCN error: zero-length 'labels' specified

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twtoal ▴ 10

@twtoal-15473

Last seen 5 months ago

United States

A PureCN run had this error at the very end of the run, after it had apparently finished:

INFO [2018-04-25 15:13:34] Done.
INFO [2018-04-25 15:13:34] ------------------------------------------------------------
Error in text.default(x = peak.ideal.means[as.character(r$ML.C[r$ML.SOMATIC])][idx.labels],  : 
  zero-length 'labels' specified
Calls: plotAbs -> plotAbs -> .plotTypeAF -> text -> text.default
Execution halted

The full log file and .rds file for this sample (VO-56T3) can be found at:

https://www.dropbox.com/s/jpuyutsnn8qry82/VO-56T3.log?dl=0

https://www.dropbox.com/s/neh6ere2subyc1j/VO-56T3.rds?dl=0

PureCN • 1.6k views

ADD COMMENT • link 6.6 years ago twtoal ▴ 10

score 0 · Answer 1 · 2018-04-25

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markus.riester ▴ 130

@markusriester-9875

Last seen 2.5 years ago

United States

Thanks a lot, I can reproduce. You can delete the files.

ADD COMMENT • link 6.6 years ago markus.riester ▴ 130

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Should be fixed in 1.9.47.

ADD REPLY • link 6.6 years ago markus.riester ▴ 130

score 0 · Answer 2 · 2018-04-26

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twtoal ▴ 10

@twtoal-15473

Last seen 5 months ago

United States

I'm running the current development version, 1.9.45. When do you think 1.9.47 will be released?

ADD COMMENT • link 6.6 years ago twtoal ▴ 10

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This should show up in devel tomorrow. It will very likely become the new stable 1.10.0 on Tuesday.

You can always get the latest GitHub version (currently 1.9.47) with BiocInstaller::biocLite("lima1/PureCN")

ADD REPLY • link 6.6 years ago markus.riester ▴ 130