coverage QC file mean duplication and "mom" columns
1
0
Entering edit mode
twtoal • 0
@twtoal-15473
Last seen 6 months ago

In the PureCN coverage QC file, are the mean duplication columns in FRACTIONS OF READS that are duplicated, or in X (number of reads that are duplicated)?

Also, several of the column names start with "mom".  Does this mean "mean of means"??

 

PureCN coverage • 327 views
ADD COMMENT
0
Entering edit mode
@markusriester-9875
Last seen 28 days ago

It's simply the mean of the duplicated.rate column in the coverage file, so fractions. mom is median divided by mean and is a simple metric of skewness. The QC file is still experimental, likely to change and thus largely undocumented. There should be a warning in the documentation. 

ADD COMMENT

Login before adding your answer.

Traffic: 468 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6