Question: coverage QC file mean duplication and "mom" columns
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gravatar for twtoal
18 months ago by
twtoal0
twtoal0 wrote:

In the PureCN coverage QC file, are the mean duplication columns in FRACTIONS OF READS that are duplicated, or in X (number of reads that are duplicated)?

Also, several of the column names start with "mom".  Does this mean "mean of means"??

 

coverage purecn • 270 views
ADD COMMENTlink modified 18 months ago by markus.riester110 • written 18 months ago by twtoal0
Answer: coverage QC file mean duplication and "mom" columns
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gravatar for markus.riester
18 months ago by
markus.riester110 wrote:

It's simply the mean of the duplicated.rate column in the coverage file, so fractions. mom is median divided by mean and is a simple metric of skewness. The QC file is still experimental, likely to change and thus largely undocumented. There should be a warning in the documentation. 

ADD COMMENTlink written 18 months ago by markus.riester110
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