The warning repeats infinitely. I have to control C multiple times to get out of cycle
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> source("https://bioconductor.org/biocLite.R")
Bioconductor version 3.6 (BiocInstaller 1.28.0), ?biocLite for help
A new version of Bioconductor is available after installing the most recent
version of R; see http://bioconductor.org/install
> biocLite()
BioC_mirror: https://bioconductor.org
Using Bioconductor 3.6 (BiocInstaller 1.28.0), R 3.4.3 (2017-11-30).
> biocLite("reactome.db")
BioC_mirror: https://bioconductor.org
Using Bioconductor 3.6 (BiocInstaller 1.28.0), R 3.4.3 (2017-11-30).
Installing package(s) 'reactome.db'
trying URL 'https://bioconductor.org/packages/3.6/data/annotation/src/contrib/reactome.db_1.62.0.tar.gz'
Content type 'application/x-gzip' length 587652911 bytes (560.4 MB)
==================================================
downloaded 560.4 MB
Warning in writeBin(block[seq_len(min(512L, remain))], out) :
problem writing to connection
Warning in writeBin(block[seq_len(min(512L, remain))], out) :
problem writing to connection
Warning in writeBin(block[seq_len(min(512L, remain))], out) :
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> sessionInfo()
R version 3.4.3 (2017-11-30)
Platform: x86_64-conda_cos6-linux-gnu (64-bit)
Running under: Red Hat Enterprise Linux Server release 6.9 (Santiago)
Matrix products: default
BLAS/LAPACK: /dev/shm/anaconda2/lib/R/lib/libRblas.so
locale:
[1] C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] BiocInstaller_1.28.0
loaded via a namespace (and not attached):
[1] compiler_3.4.3 tools_3.4.3
>
