I maintain "rgsepd" which uses "DESeq2" and "goseq" to run an annotation pipeline. Internally, when I have a character representation of a GO term I'm interested in more information about, I use the list interface (double-bracket) to a global exported by the GO.db library.
The command GOTERM[["GO:0034599"]] used to return to me an object with with slots like Term, Ontology, and Definition. Now I'm getting an error condition
Error in initialize(value, ...) :
argument "go_id" is missing, with no default
Which looks like either a bug or the API has moved out from under me. Has anyone else used GOTERM[] or know what I can do to get my package running again ?